View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13525_low_1 (Length: 832)
Name: NF13525_low_1
Description: NF13525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13525_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 138 - 811
Target Start/End: Complemental strand, 13162563 - 13161866
Alignment:
| Q |
138 |
caacatagcggaggttgcagtactaacacactccataattcacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
237 |
Q |
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| T |
13162563 |
caacatagcggaggttgcagtactaacacactccataatccacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
13162464 |
T |
|
| Q |
238 |
ttcactgaataatacgc-ttgtcaaaatccactttaaaca------actctttattccattttttagcatcatatatcacttcattagcaacaagaatac |
330 |
Q |
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| T |
13162463 |
ttcagtgagtaatacgccttgtcaaaatccactttaaacataatcaactctttattccattttttagcatcatatatcacttcattagcaacaaaaatac |
13162364 |
T |
|
| Q |
331 |
catccaatatctatcttcatttcacaaacgataattattctttaaaatcactttatcaattactaatttgagcctgcttagtaacacttttgccaaaact |
430 |
Q |
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| T |
13162363 |
catccaatatctatcttcatttcacaaacgatgattattctttaaaatcactttatcaattactaatttgaacctcctcagtatcacttttgccaaaact |
13162264 |
T |
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| Q |
431 |
ttatacatacacccaactaaagagataggtgtaaag------agcctatcagatttagacaccttatgtattaaataaataaataaacaattagatcctt |
524 |
Q |
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| T |
13162263 |
ttatacatacacccaactaaagagataggtgtaaagtccgcaagcctatcagatttagagaccttaggtattaaataaataaataaacaattagatcctt |
13162164 |
T |
|
| Q |
525 |
tcactagcctaccatacaagtaaaattccagcaaaaatttcataaaattacctttgatgtcaatccataaatcctttataaaaccatagttaatcccata |
624 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| ||||| |
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| T |
13162163 |
tcaccagcctaccatacaagtaaaattccagcaaaaatttcataaaattacctttgatgtcaatccataaatcc-ttataaaacaaaagttaaccccatg |
13162065 |
T |
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| Q |
625 |
tggcccgggcct---------atcacaatccaaaactgcttaattactttacgtctttctcgctaaatgatttctctaactcataaggatattcaaaatt |
715 |
Q |
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| T |
13162064 |
tgttctgggactcttaaaacgatcacaattcaaaactgcttaattactttacatctttctcgctaaatgatttctctaactcataagcatatttaaaatt |
13161965 |
T |
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| Q |
716 |
gatagatttaaaatttaaattcttaactacaggcctgtcagaacttactagcagaaagtgatctttaaa---gtggttagacactatttatcgaactcc |
811 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||| |
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| T |
13161964 |
gataaatttaaaatttaaattcttaattacaggttagtcagaacttactagcagaaagcgatctttaaagtggtggttatacactgtttatcgaactcc |
13161866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 13162711 - 13162590
Alignment:
| Q |
19 |
atataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaacgatctccctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13162711 |
atataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaacgatctccctg |
13162612 |
T |
|
| Q |
119 |
ccttaagtctctcccaaatcaa |
140 |
Q |
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| T |
13162611 |
ccttaagtctctcccaaatcaa |
13162590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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