View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13525_low_2 (Length: 474)
Name: NF13525_low_2
Description: NF13525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13525_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 2508656 - 2508199
Alignment:
| Q |
18 |
gtttagggggttgtccttatccgttgatgaaaataatgtaacgattcgtgtctgctgtcatcttatttagtatccaattttgtttaagactgtctaagct |
117 |
Q |
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| T |
2508656 |
gtttagggggttgtccttatccgttgatgaaaataatgtaacgattcgtgtctgctgtcatcttatttagtatccaattttgtttaagactgtctaagct |
2508557 |
T |
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| Q |
118 |
gaaattatagtaaaaacagtgaaaatatttttatttgttggttttgttttcttcagaaatcatcaagtagaa-gttgaaggaaggttaaaatggaaaaca |
216 |
Q |
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| T |
2508556 |
gaaattatagtaaaaacagtgaaaatatttttatttgttggttttgttttcttcagaaatcatcaagtagaaagttgaaggaaggttaaaatggaaaaca |
2508457 |
T |
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| Q |
217 |
cagaggaaaacaagtccaaggtagtggtgattgattctttgcaatcgtgggagtttcatgtcaaccaagcttctaatcagaattctcctgtaagtcaaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2508456 |
cagaggaaaacaagtccaaggtagtggtgattgattctttgcaatcatgggagtttcatgtcaaccaagcttctaatcagaattctcctgtaagtcaaag |
2508357 |
T |
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| Q |
317 |
tttgaatgtttttgaagcttcaaacgagtatttgatttgtgaattttctagttttgattcaaattgatttgctggttcaggttgtgttgttctttttctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2508356 |
tttgaatgtttttgaagcttcaaacgagtatttgatttgtgaattttctagttttgattcaaattgatttgctggttcaggttgtgttgttctttttctt |
2508257 |
T |
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| Q |
417 |
taaggattgagtattattggattgattgatagatatattcttatattttttgtatttt |
474 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2508256 |
taagggtagagtattattggattgattgatagatatattcttatattttttgtatttt |
2508199 |
T |
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