View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13525_low_4 (Length: 220)
Name: NF13525_low_4
Description: NF13525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13525_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 24420237 - 24420086
Alignment:
| Q |
18 |
cattgttgtggttaatttgtattcaagcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcat |
117 |
Q |
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| T |
24420237 |
cattgttgtggttaatttgtattcaatcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcat |
24420138 |
T |
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| Q |
118 |
gcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt |
169 |
Q |
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| T |
24420137 |
gcatggtgttaattcataagtttgtatttatttttctcctttagttgttttt |
24420086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
| Q |
75 |
agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt |
169 |
Q |
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| T |
24471408 |
agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt |
24471502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 24475877 - 24475730
Alignment:
| Q |
18 |
cattgttgtggttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcct---tattttgattcaaatgcatctgt |
113 |
Q |
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| T |
24475877 |
cattgttctggttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaagtgcaattgt |
24475778 |
T |
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| Q |
114 |
gcatgcatggtgttaattcataagtttgtatttatttatctcctttag |
161 |
Q |
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| T |
24475777 |
gcatgtatggtgttaattcataagtcagtatttatcaatctcctttag |
24475730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 24406262 - 24406228
Alignment:
| Q |
17 |
acattgttgtggttaatttgtattcaagcttttgt |
51 |
Q |
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| T |
24406262 |
acattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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