View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13526_low_1 (Length: 521)
Name: NF13526_low_1
Description: NF13526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13526_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 123 - 458
Target Start/End: Original strand, 1488831 - 1489165
Alignment:
| Q |
123 |
aagtaatcattagtattattaacaattcaatttatccaaaaatgataaattaagaactcaaaagaaggtttggtttgatctggtatatgtcaattttctt |
222 |
Q |
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| T |
1488831 |
aagtaatcattagtattattaacaattcaatttatccaaaaatgataaattaagaactcaaaagaaggtttggtttgatctggtatatgtcaattttctt |
1488930 |
T |
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| Q |
223 |
tgctctttcttgcatgcatcgtgatgatccgtgacattcacgcgatgtcagtatgccacccttgtctctttcaacagtcaacacttgtcacatagaatac |
322 |
Q |
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| T |
1488931 |
tgctctttcttgcatgcatcgtgatgatccgtgacattcacgcgatgtcagtatgccacccttgtctctttcaacagtcaacacttgtcacatagaatac |
1489030 |
T |
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| Q |
323 |
tcgtcaaacttatcttataaaataaaataaaatcaaatgcatcaattaagataagttgaatgaaattaacgttgatctcaccttttaaaaatgagtctta |
422 |
Q |
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| T |
1489031 |
tcgtcaaacttatcttataaaa-aaaaaaaaatcaaatacatcaattaagataagttgaatgaaattaacgttgatctcaccttttaaaaatgagtctta |
1489129 |
T |
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| Q |
423 |
atcgtggtcgatacatcaattaagataagttgaatg |
458 |
Q |
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| T |
1489130 |
atcgtggtcgatacatcaattaagataagttgaatg |
1489165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 362 - 505
Target Start/End: Original strand, 1489143 - 1489286
Alignment:
| Q |
362 |
catcaattaagataagttgaatgaaattaacgttgatctcaccttttaaaaatgagtcttaatcgtggtcgatacatcaattaagataagttgaatggca |
461 |
Q |
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| T |
1489143 |
catcaattaagataagttgaatgaaattaacgttgatctcaccttttaaaaatgagtcttaatcgtggtcgatacatcaattaagataagttgaatggca |
1489242 |
T |
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| Q |
462 |
aaacatannnnnnnnataaaaacgctattattaacattttttat |
505 |
Q |
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| T |
1489243 |
aaacatattttttttataaaaacgctattattaacattttttat |
1489286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 1488717 - 1488746
Alignment:
| Q |
9 |
catcatcaccagagaccttcatgtaagctc |
38 |
Q |
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| T |
1488717 |
catcatcaccagagaccttcatgtaagctc |
1488746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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