View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13526_low_2 (Length: 286)

Name: NF13526_low_2
Description: NF13526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13526_low_2
NF13526_low_2
[»] chr2 (2 HSPs)
chr2 (96-268)||(18031190-18031363)
chr2 (6-46)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (108-268)||(55156474-55156639)
[»] chr3 (3 HSPs)
chr3 (96-268)||(29642020-29642196)
chr3 (140-190)||(4803977-4804027)
chr3 (140-187)||(10535703-10535750)
[»] chr7 (1 HSPs)
chr7 (102-171)||(22002453-22002522)
[»] chr8 (1 HSPs)
chr8 (100-196)||(32309433-32309529)
[»] chr6 (1 HSPs)
chr6 (100-196)||(33364663-33364759)
[»] chr1 (2 HSPs)
chr1 (100-196)||(30330131-30330227)
chr1 (140-187)||(25626139-25626186)
[»] scaffold0009 (1 HSPs)
scaffold0009 (140-187)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 18031190 - 18031363
Alignment:
Q  96 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  18031190 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaa 18031289  T
Q  196 aacaatatgacaata-ttcttttcataatgtaaacataatggaatgagctttcagttttcttgtacccacacct 268  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||| |||||||||    
T  18031290 aagaatatgacaatacttcttttcataatgtaaatataatggaatgagcttccaattttcttgtccccacacct 18031363  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 18031100 - 18031140
Alignment:
Q  6 tggacatcatcaactcttggtcctggtggtcatcgttactc 46  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  18031100 tggacatcaacaactcttggtcatggtggtcatcgttactc 18031140  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 55156474 - 55156639
Alignment:
Q  108 caagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgaca 207  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  55156474 caagtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgaca 55156573  T
Q  208 ata-ttcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacct 268  Q
    ||| ||||||  ||||    |||||||| ||||||||||||||   |||||||||| | |||||||    
T  55156574 atacttctttctataatttctgtaaacaaaatggaatgagcttctggttttcttgtcctcacacct 55156639  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 29642020 - 29642196
Alignment:
Q  96 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 195  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||    
T  29642020 gcacacaaatctcaagctttttccacttttctttattttcgcaatcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaa 29642119  T
Q  196 aacaatatgacaa-tattcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacct 268  Q
    || |||||||||| | |||||| |||||    |||||||| ||||||| |||||| |||||||||||| | |||||||    
T  29642120 aataatatgacaattcttctttccataatctttgtaaacaaaatggaa-gagcttccagttttcttgtcctcacacct 29642196  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  140 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 190  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  140 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 187  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 22002522 - 22002453
Alignment:
Q  102 aaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataa 171  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  22002522 aaatctcaagcttattccacttttattcattttcctaatcaaattaaaacaaaatttgaaagagatataa 22002453  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 32309529 - 32309433
Alignment:
Q  100 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 196  Q
    ||||||| |||||| | |||| |||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309529 ataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 33364759 - 33364663
Alignment:
Q  100 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 196  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364759 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 30330131 - 30330227
Alignment:
Q  100 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 196  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330131 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  140 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 187  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  140 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 187  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

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