View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13526_low_5 (Length: 233)
Name: NF13526_low_5
Description: NF13526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13526_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 28609594 - 28609410
Alignment:
| Q |
30 |
ggggtaccaaatctaaatacaaaaagaaatctagtgttgtctcaaacattctcaaatttttgttggaaagctttttcaccaaccattattcttattgttt |
129 |
Q |
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| T |
28609594 |
ggggtaccaaatctaaatacaaaacgaaatctagtgttgtctcaaacattctcaaatttatgttggaaagctttttcaccaaccattattcttattgttt |
28609495 |
T |
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| Q |
130 |
cttcactacaacacctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccatacccatatt |
214 |
Q |
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| T |
28609494 |
cttcactacaacacctcaaaagcatcattattgtcgttcacctggtttggttgctttcccaaaaccattcctccatacccatatt |
28609410 |
T |
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Target: scaffold0002 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 437390 - 437494
Alignment:
| Q |
110 |
aaccattattcttattgtttcttcactacaacacctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccataccc |
209 |
Q |
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|||||||||||| ||| | ||||||||||| ||||||| |||| |||||| |||||| ||||| ||||||||| ||||||||||||| |||||||| |
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| T |
437390 |
aaccattattctcattctgcattcactacaaccactcaaaaccatcgttattggtggtcacatggttgggttgcttttccaaaaccattcccccataccc |
437489 |
T |
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| Q |
210 |
atatt |
214 |
Q |
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||||| |
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| T |
437490 |
atatt |
437494 |
T |
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