View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13527_high_1 (Length: 476)
Name: NF13527_high_1
Description: NF13527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13527_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 459
Target Start/End: Complemental strand, 46214223 - 46213768
Alignment:
| Q |
4 |
atgtccaagaatataatagatggttatgcttttttcattctttctagtctcactgatattttatcttctgtccataaaaataataggatgtacggttaag |
103 |
Q |
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| T |
46214223 |
atgtccataaatataatagatggttaagcttttttcattctttctagtctcactgatattttatcttctgtccataaaaataataggatgtatggttaag |
46214124 |
T |
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| Q |
104 |
cannnnnnnnagcttctgccttgtatggtggtaaaactatgttcatattcttttttaaattttccaatctggaattgtactaaacatatcttccagcttg |
203 |
Q |
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| T |
46214123 |
cattttttttagcttctgccttgtatggtggtaaaactatgttcatattcttttttaaattttccaatctggaattgtactaaacatatcttccagcttg |
46214024 |
T |
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| Q |
204 |
catgggaaattagagataaatttagctaatagttagttaagagtttgtaagttagttattcttgtcatcttcttcattttcatatgaactcatgtgtata |
303 |
Q |
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| T |
46214023 |
catgggaaattagagataaatttagctaatagttagttaagagtttgtaagttagttattcttgtcatcttcttcattttcatatgaactcatgtgtata |
46213924 |
T |
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| Q |
304 |
aagagaatctcttatattagttattaataaacaaaatattttagtaatacctggtgccattcctcttgctgttccataagcataaccaagaagattagca |
403 |
Q |
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| T |
46213923 |
aagagaatctcttatattagttattaataaacaaaatattttagtaatacctggtgccattcctcttgctgttccataagcataaccaagaagattagca |
46213824 |
T |
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| Q |
404 |
ccatgcaccggagatccggcaacagtagctgcagtgtgagttccatgaccatcttg |
459 |
Q |
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| T |
46213823 |
ccatgcaccggagatccggcaacagtagctgcagtgtgagttccatgaccatcttg |
46213768 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 12044495 - 12044444
Alignment:
| Q |
254 |
gttagttattcttgtcatcttcttcattttcatatgaactcatgtgtataaa |
305 |
Q |
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| T |
12044495 |
gttagttatccctgttatcttcttcattttcatatgaactcgtatgtataaa |
12044444 |
T |
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