View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13527_low_1 (Length: 680)

Name: NF13527_low_1
Description: NF13527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13527_low_1
NF13527_low_1
[»] chr8 (27 HSPs)
chr8 (90-597)||(10678253-10678756)
chr8 (3-75)||(35181516-35181588)
chr8 (3-75)||(34304788-34304860)
chr8 (1-75)||(1375542-1375616)
chr8 (1-75)||(16603652-16603726)
chr8 (3-75)||(18066746-18066818)
chr8 (3-73)||(20148762-20148832)
chr8 (3-75)||(5754903-5754975)
chr8 (3-75)||(11582766-11582838)
chr8 (35-75)||(19386630-19386670)
chr8 (7-75)||(29705362-29705430)
chr8 (3-75)||(36743511-36743583)
chr8 (1-74)||(16358859-16358933)
chr8 (3-73)||(29800978-29801048)
chr8 (3-73)||(33630021-33630091)
chr8 (3-73)||(42295197-42295267)
chr8 (3-75)||(30660770-30660842)
chr8 (1-75)||(40528660-40528735)
chr8 (3-73)||(26125637-26125707)
chr8 (3-73)||(30912590-30912660)
chr8 (3-73)||(42699259-42699329)
chr8 (3-75)||(2165991-2166063)
chr8 (39-75)||(10678204-10678240)
chr8 (3-67)||(31384672-31384736)
chr8 (3-75)||(42197463-42197535)
chr8 (3-74)||(45397317-45397388)
chr8 (3-75)||(2546996-2547068)
[»] chr3 (22 HSPs)
chr3 (1-75)||(25996268-25996342)
chr3 (1-75)||(10457918-10457992)
chr3 (3-75)||(9434124-9434196)
chr3 (1-75)||(4190291-4190365)
chr3 (1-75)||(52628003-52628077)
chr3 (3-75)||(42100688-42100760)
chr3 (3-75)||(45126956-45127028)
chr3 (3-75)||(51757593-51757665)
chr3 (8-75)||(34791829-34791896)
chr3 (3-75)||(40808865-40808937)
chr3 (3-75)||(46941053-46941125)
chr3 (3-74)||(54237097-54237168)
chr3 (18-75)||(54246191-54246248)
chr3 (3-75)||(24688430-24688502)
chr3 (3-75)||(25413681-25413753)
chr3 (3-75)||(36150130-36150202)
chr3 (3-74)||(40480750-40480821)
chr3 (3-74)||(42394447-42394518)
chr3 (27-75)||(47191077-47191125)
chr3 (3-73)||(27748565-27748635)
chr3 (1-71)||(29558260-29558330)
chr3 (7-73)||(53581890-53581956)
[»] chr1 (21 HSPs)
chr1 (1-75)||(35003294-35003368)
chr1 (1-75)||(48119628-48119702)
chr1 (3-75)||(44112677-44112749)
chr1 (1-75)||(38113221-38113295)
chr1 (1-75)||(45639758-45639832)
chr1 (1-75)||(38335918-38335992)
chr1 (3-75)||(41065153-41065225)
chr1 (1-75)||(46168383-46168457)
chr1 (3-75)||(45427773-45427845)
chr1 (28-75)||(14427347-14427394)
chr1 (1-75)||(37814778-37814852)
chr1 (3-75)||(43571114-43571186)
chr1 (3-73)||(2497590-2497660)
chr1 (1-75)||(35000139-35000213)
chr1 (1-75)||(45705825-45705899)
chr1 (3-75)||(5489776-5489848)
chr1 (1-75)||(26585462-26585536)
chr1 (1-75)||(23989549-23989624)
chr1 (3-75)||(24769527-24769599)
chr1 (3-75)||(48498990-48499062)
chr1 (1-75)||(750331-750405)
[»] chr6 (18 HSPs)
chr6 (1-75)||(33242403-33242477)
chr6 (1-73)||(27441544-27441616)
chr6 (1-75)||(33253913-33253987)
chr6 (1-75)||(3213400-3213474)
chr6 (3-75)||(7273363-7273435)
chr6 (3-75)||(13743249-13743321)
chr6 (3-75)||(13748749-13748821)
chr6 (3-73)||(24204015-24204085)
chr6 (3-75)||(9698361-9698433)
chr6 (3-75)||(26670037-26670109)
chr6 (24-75)||(31109271-31109322)
chr6 (1-75)||(21293703-21293777)
chr6 (3-75)||(26466799-26466871)
chr6 (3-75)||(7292747-7292819)
chr6 (3-75)||(7367549-7367621)
chr6 (3-75)||(30014343-30014415)
chr6 (1-75)||(21279929-21280003)
chr6 (3-73)||(30735984-30736054)
[»] chr2 (27 HSPs)
chr2 (3-75)||(43114557-43114629)
chr2 (1-75)||(966860-966934)
chr2 (3-73)||(11825682-11825752)
chr2 (1-75)||(18491705-18491779)
chr2 (3-75)||(12415488-12415560)
chr2 (3-75)||(12427548-12427620)
chr2 (7-73)||(41282006-41282072)
chr2 (1-73)||(4299446-4299518)
chr2 (7-75)||(16803968-16804036)
chr2 (7-75)||(16843250-16843318)
chr2 (1-75)||(14285676-14285750)
chr2 (3-73)||(6518497-6518566)
chr2 (1-75)||(34895767-34895841)
chr2 (5-75)||(16096747-16096817)
chr2 (3-75)||(1750414-1750486)
chr2 (3-75)||(30838632-30838704)
chr2 (1-75)||(4764752-4764826)
chr2 (1-74)||(34817802-34817875)
chr2 (3-75)||(12302281-12302353)
chr2 (3-74)||(19047158-19047229)
chr2 (3-73)||(43490429-43490499)
chr2 (1-73)||(7070418-7070490)
chr2 (3-73)||(33229303-33229374)
chr2 (1-75)||(13780761-13780835)
chr2 (1-73)||(8896609-8896681)
chr2 (39-75)||(42849910-42849946)
chr2 (3-75)||(43335791-43335863)
[»] chr4 (32 HSPs)
chr4 (1-75)||(711960-712034)
chr4 (1-75)||(960896-960970)
chr4 (1-75)||(17619178-17619252)
chr4 (1-75)||(32728357-32728431)
chr4 (1-73)||(3756272-3756344)
chr4 (1-75)||(55272402-55272476)
chr4 (1-75)||(46827732-46827806)
chr4 (3-75)||(28982850-28982922)
chr4 (1-73)||(35037007-35037079)
chr4 (1-75)||(48435605-48435679)
chr4 (1-75)||(28988473-28988547)
chr4 (1-75)||(49229690-49229764)
chr4 (18-75)||(1771309-1771366)
chr4 (3-75)||(23035980-23036052)
chr4 (3-75)||(27864564-27864636)
chr4 (3-75)||(33703141-33703213)
chr4 (3-75)||(55966374-55966446)
chr4 (3-73)||(27893870-27893940)
chr4 (1-42)||(19879987-19880028)
chr4 (3-75)||(25051693-25051765)
chr4 (3-75)||(27316741-27316813)
chr4 (3-75)||(27550309-27550381)
chr4 (3-75)||(12496956-12497028)
chr4 (39-75)||(36004168-36004204)
chr4 (1-73)||(38851515-38851587)
chr4 (27-74)||(41878407-41878454)
chr4 (3-73)||(31680904-31680974)
chr4 (3-73)||(43514714-43514784)
chr4 (101-195)||(47209992-47210086)
chr4 (3-75)||(35017733-35017804)
chr4 (1-73)||(41327569-41327641)
chr4 (3-75)||(48463478-48463550)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-73)||(45745-45817)
[»] chr7 (26 HSPs)
chr7 (3-75)||(40236919-40236991)
chr7 (1-75)||(31513287-31513361)
chr7 (1-74)||(31408659-31408732)
chr7 (3-75)||(27535259-27535331)
chr7 (3-73)||(4638227-4638297)
chr7 (1-73)||(10573751-10573823)
chr7 (155-255)||(25663952-25664052)
chr7 (8-75)||(39998408-39998475)
chr7 (3-73)||(44326180-44326250)
chr7 (7-75)||(5810956-5811024)
chr7 (3-75)||(24001040-24001112)
chr7 (3-75)||(42538459-42538531)
chr7 (1-75)||(33384870-33384945)
chr7 (1-75)||(5194257-5194331)
chr7 (3-72)||(26898430-26898499)
chr7 (18-75)||(41861674-41861731)
chr7 (3-75)||(35069721-35069793)
chr7 (3-75)||(45326020-45326092)
chr7 (24-75)||(24280645-24280696)
chr7 (7-73)||(43343656-43343722)
chr7 (7-73)||(44416966-44417032)
chr7 (3-75)||(5015395-5015467)
chr7 (27-75)||(9216302-9216350)
chr7 (3-75)||(42972852-42972924)
chr7 (1-66)||(32029843-32029908)
chr7 (30-75)||(43317443-43317488)
[»] chr5 (13 HSPs)
chr5 (1-75)||(17208074-17208148)
chr5 (3-75)||(32473422-32473494)
chr5 (3-75)||(33855071-33855143)
chr5 (1-75)||(30622745-30622818)
chr5 (1-75)||(38470579-38470653)
chr5 (3-75)||(7617133-7617205)
chr5 (3-75)||(2614677-2614749)
chr5 (3-75)||(22512305-22512377)
chr5 (3-75)||(41334691-41334763)
chr5 (3-73)||(5256997-5257067)
chr5 (3-75)||(18033982-18034054)
chr5 (3-75)||(33801469-33801541)
chr5 (18-73)||(25915030-25915085)
[»] scaffold0385 (1 HSPs)
scaffold0385 (3-75)||(11251-11323)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-75)||(35482-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (3-75)||(685-757)
[»] scaffold0038 (1 HSPs)
scaffold0038 (3-74)||(112656-112727)
[»] scaffold0187 (2 HSPs)
scaffold0187 (3-75)||(14216-14288)
scaffold0187 (3-75)||(24544-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (3-75)||(23449-23521)


Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 90 - 597
Target Start/End: Original strand, 10678253 - 10678756
Alignment:
Q  90 gttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaagaactttcctcaccaccacc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678253 gttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaagaactttcctcaccaccacc 10678352  T
Q  190 acaaaaagcacaattctaagaagcaaccggtgttaagacatttctccttgagaaattaatctttgttgagatatgattgatctaaaaggagtttcctaga 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    ||| |||||||||||| ||    
T  10678353 acaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatctttgttgggatatgat----ctagaaggagtttccttga 10678448  T
Q  290 gatatcaacggtctttgatgacttttaaccattaccttccaacaactacacaccctctccccatatttacacctgaggacatatttccaaaggatgttcc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10678449 gatatcaacggtctttgatgacttttaaccattaccttccaacaaccacacaccctctccccatatttacacttgaggacatatttccaaaggatgttcc 10678548  T
Q  390 ccttggatcaatctccaaagtcatttaaccaatagacttaaatttaccactctaacatccctcgctccccaaaccacccttactcagctggtgaaattgc 489  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678549 ccttggatcaatctccaaagtcatttagccaatagacttaaatttaccactctaacatccctcgctccccaaaccacccttactcagctggtgaaattgc 10678648  T
Q  490 attcatgatgatcatttaaggtttacaagcctttgtttagctttcgattatcatgtctagtggaataatatgcctcttttgtattggttattccaccgag 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678649 attcatgatgatcatttaaggtttacaagcctttgtttagctttcgattatcatgtctagtggaataatatgcctcttttgtattggttattccaccgag 10678748  T
Q  590 taatgctg 597  Q
    ||||||||    
T  10678749 taatgctg 10678756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 35181588 - 35181516
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35181588 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 34304860 - 34304788
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34304860 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1375616 - 1375542
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  1375616 atttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16603652 - 16603726
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||||| |||||  |||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  16603652 atttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 18066746 - 18066818
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  18066746 ttactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 20148832 - 20148762
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  20148832 ttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 5754975 - 5754903
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  5754975 ttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 11582838 - 11582766
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  11582838 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 19386630 - 19386670
Alignment:
Q  35 aatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19386630 aatagggtgtatgattaaagggtgttcatgtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 29705430 - 29705362
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||| ||| ||||| |||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  29705430 caaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 36743511 - 36743583
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  36743511 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16358859 - 16358933
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttc-atgtaacattttc 74  Q
    ||||| |||||| | ||||||  ||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  16358859 atttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 29800978 - 29801048
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  29800978 ttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 33630021 - 33630091
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||| ||||||||| ||||  || |||||||||||  |||||||||||||||||||||| |||||||||||    
T  33630021 ttactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 42295267 - 42295197
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| |||| |||||||||  |||||| || ||||||||||||||||||||||||    
T  42295267 ttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 30660770 - 30660842
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || ||||  | ||||||||||||||||||||||||||    
T  30660770 ttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40528660 - 40528735
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||||||| |||||||||||||||||||| |||| | || || ||||||||||||||||  |||||||    
T  40528660 atttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgtattattttcc 40528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 26125707 - 26125637
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| || ||||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  26125707 ttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 30912590 - 30912660
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||||||||  || ||||| |||  ||||||||| ||||||| || ||||||||||||||||||||||||    
T  30912590 ttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 42699329 - 42699259
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||    
T  42699329 ttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 2165991 - 2166063
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||  ||||| ||||||| |||||| ||||||| || |||| ||||||||||||| |||||||    
T  2165991 ttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 10678204 - 10678240
Alignment:
Q  39 gggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 31384736 - 31384672
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 67  Q
    |||||||||| | | ||||| ||||||||||||||||  |||| || ||||||||||||||||||    
T  31384736 ttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 42197463 - 42197535
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || | |||| |||| ||||||| || |||| |||||||||||||||||||||    
T  42197463 ttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 45397388 - 45397317
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||| ||||| ||| ||||| || ||||||| ||| ||||||| || ||||||||||||| |||||||||||    
T  45397388 ttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 2547068 - 2546996
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  2547068 ttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25996342 - 25996268
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  25996342 atttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 10457918 - 10457992
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10457918 atttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 9434196 - 9434124
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9434196 ttaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4190291 - 4190365
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||  ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190291 atttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52628003 - 52628077
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| | ||||||  ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  52628003 atttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 42100760 - 42100688
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  42100760 ttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 45126956 - 45127028
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  45126956 ttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 51757665 - 51757593
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||||||| ||||  ||| ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  51757665 ttactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 34791896 - 34791829
Alignment:
Q  8 aaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||| ||||  ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  34791896 aaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 40808937 - 40808865
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| ||||||| || |||| |||||| ||||||||||||||    
T  40808937 ttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 46941125 - 46941053
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||||||||||||  | |||| || ||||||||||||||||||||||||||    
T  46941125 ttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 54237168 - 54237097
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || |||||||||||||||||||||||||    
T  54237168 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 54246191 - 54246248
Alignment:
Q  18 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  54246191 taatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 24688430 - 24688502
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| | |||||  | ||||||||||||||||||||||||||    
T  24688430 ttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 25413753 - 25413681
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||||    
T  25413753 ttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 36150202 - 36150130
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| | ||| || ||||||| ||| |||||||||| |||||||| |||||||||||||||||    
T  36150202 ttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 40480821 - 40480750
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||| ||| ||||| || || |||||||| |||  ||||| |||||||||||||||||||||||||    
T  40480821 ttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 42394447 - 42394518
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  42394447 ttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 47191077 - 47191125
Alignment:
Q  27 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||  |||||| || ||||||||||||||||||||||||||    
T  47191077 gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 27748635 - 27748565
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| ||  |||||| |||  ||||||||| |||| |||||||||||||||||||    
T  27748635 ttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29558260 - 29558330
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 71  Q
    ||||||||| || | | |||||||| |||||||||||  | ||||||| |||||||||||||| |||||||    
T  29558260 atttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 53581890 - 53581956
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||| ||| ||||| || || |||||||| | |||||||| ||||| ||||||||||||||||||    
T  53581890 caaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35003368 - 35003294
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35003368 atttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48119702 - 48119628
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48119702 atttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 44112749 - 44112677
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112749 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38113221 - 38113295
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38113221 atttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45639758 - 45639832
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  45639758 atttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38335992 - 38335918
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38335992 atttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 41065225 - 41065153
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||| || ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41065225 ttaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46168457 - 46168383
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  || |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  46168457 atttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 45427773 - 45427845
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  |||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  45427773 ttaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 14427394 - 14427347
Alignment:
Q  28 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427394 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37814852 - 37814778
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  37814852 atttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 43571114 - 43571186
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  43571114 ttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 2497590 - 2497660
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| |||||||||||||||||||||||| |  ||||||| |||| |||||| ||||||||||||    
T  2497590 ttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35000139 - 35000213
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||||||| ||||| |||  || |||||||| ||||||||||||| |||||||||||||||||||||    
T  35000139 atttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45705899 - 45705825
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||||||| ||||  |||| |||||||||||  |||||||||||||||||||||| |||||||||||    
T  45705899 atttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 5489848 - 5489776
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  5489848 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26585536 - 26585462
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||| ||||| ||||||||  |||||||||||||||  ||||||||||||||  ||||||| |||||||||||    
T  26585536 atttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23989549 - 23989624
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaa-gggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||| ||||| || |||| |||||| | |||||||| |||| ||||||||||||||||||||||    
T  23989549 atttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttcc 23989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 24769527 - 24769599
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| | |||||  | |||| |||||||||| ||||||||||    
T  24769527 ttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 48498990 - 48499062
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  48498990 ttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 750331 - 750405
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||| ||| | ||| |||||||||||||| ||||||| ||   ||||||||||| ||||||||||||    
T  750331 atttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33242477 - 33242403
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  33242477 atttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27441616 - 27441544
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  27441616 atttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33253987 - 33253913
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  33253987 atttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3213474 - 3213400
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  3213474 atttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 7273363 - 7273435
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||  ||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  7273363 ttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 13743249 - 13743321
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13743249 ttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 13748749 - 13748821
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13748749 ttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 24204015 - 24204085
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||| || |||| |||||||||||||||||||    
T  24204015 ttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9698361 - 9698433
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  9698361 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 26670037 - 26670109
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  26670037 ttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 31109271 - 31109322
Alignment:
Q  24 atggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  31109271 atggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21293703 - 21293777
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||| |||||||||||| |    ||||||| ||||||||||| ||||||||||||||    
T  21293703 atttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 26466871 - 26466799
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||  || ||||| |||| ||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  26466871 ttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 7292819 - 7292747
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||| |||  ||||||||| |||| ||||||| |||||||||||||    
T  7292819 ttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 7367621 - 7367549
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||| ||||||||  ||||||||| |||| | ||||||| |||||||||||    
T  7367621 ttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 30014415 - 30014343
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| | | ||||| ||||| |||| ||| || |||| || ||||||||||||||||||||||||||    
T  30014415 ttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21280003 - 21279929
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||| ||||| ||||| ||| |||| |  ||||  | ||||||||||||||||||||||||||    
T  21280003 atttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 30736054 - 30735984
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||  ||||| ||| |||||||||| ||||||| || ||||  ||||||||||||||||||    
T  30736054 ttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 43114629 - 43114557
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43114629 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 966860 - 966934
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  966860 atttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 11825682 - 11825752
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825682 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 18491779 - 18491705
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18491779 atttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 12415488 - 12415560
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12415488 ttaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 12427548 - 12427620
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12427548 ttaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 41282006 - 41282072
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41282006 caaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4299446 - 4299518
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4299446 atttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 16804036 - 16803968
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16804036 caaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 16843318 - 16843250
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16843318 caaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 14285750 - 14285676
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  14285750 atttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatattttcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6518497 - 6518566
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||||| ||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6518497 ttaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34895767 - 34895841
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  34895767 atttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 16096817 - 16096747
Alignment:
Q  5 accaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||| ||| ||||| |||||||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  16096817 accaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 1750486 - 1750414
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1750486 ttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 30838704 - 30838632
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  30838704 ttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4764752 - 4764826
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| |   ||||| |||||||||||||||||||||| || |||| |||||| ||||||||||||||    
T  4764752 atttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34817802 - 34817875
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||||||| | || |  ||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  34817802 atttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 12302281 - 12302353
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| || ||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  12302281 ttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 19047229 - 19047158
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  19047229 ttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 43490429 - 43490499
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| || | ||||||||| || |||| || ||||||||||||||||||||||||    
T  43490429 ttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7070490 - 7070418
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||| ||||||||||  |||| |||| |  |||||| || ||||||| ||||||||||||||||||||||||    
T  7070490 atttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 33229374 - 33229303
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| ||||||||||||||  |||||| | || |||||||||||||||| ||||||    
T  33229374 ttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13780761 - 13780835
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||| ||| |||| |||||||||||||||  ||||| ||| ||||  ||||| ||||||||||||||    
T  13780761 atttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8896609 - 8896681
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||| | | || | ||| ||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  8896609 atttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 42849910 - 42849946
Alignment:
Q  39 gggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42849910 gggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 43335791 - 43335863
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||| ||||||||  |||||| || |||| | ||||||| |||||||||||    
T  43335791 ttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 712034 - 711960
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  712034 atttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 960896 - 960970
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  960896 atttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17619178 - 17619252
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17619178 atttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32728431 - 32728357
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32728431 atttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3756272 - 3756344
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3756272 atttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55272402 - 55272476
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  55272402 atttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46827732 - 46827806
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||| || ||||||  || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46827732 atttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 28982850 - 28982922
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  28982850 ttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35037079 - 35037007
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  35037079 atttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48435605 - 48435679
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  48435605 atttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28988547 - 28988473
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||||||| || |  ||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  28988547 atttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49229690 - 49229764
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||| ||| ||||||||  |||  ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  49229690 atttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1771309 - 1771366
Alignment:
Q  18 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1771309 taatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 23036052 - 23035980
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| |||||||| ||||||||||||||||||| || ||||||  ||||||||||||||||||    
T  23036052 ttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27864636 - 27864564
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  27864636 ttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 33703213 - 33703141
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  33703213 ttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 55966374 - 55966446
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||| |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  55966374 ttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 27893870 - 27893940
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  27893870 ttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19880028 - 19879987
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggt 42  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  19880028 atttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 25051765 - 25051693
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| ||||||| || ||||| |||||||||| |||||||||    
T  25051765 ttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27316741 - 27316813
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||||||||| |||||||||| |||  |||||| || |||||||||||| | |||||||||||    
T  27316741 ttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27550381 - 27550309
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||||||||||||||||||||||||    
T  27550381 ttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 12497028 - 12496956
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  12497028 ttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  39 gggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 38851587 - 38851515
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||| |||||||||| ||||  |||| ||||||| || | |||||||||||||| | |||||||||||||||    
T  38851587 atttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 41878454 - 41878407
Alignment:
Q  27 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||||  ||||||||| ||||| |||||||||||||||||||    
T  41878454 gggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 31680974 - 31680904
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||||| |||||||||||| |  ||||||| |||| |||||| | ||||||||||    
T  31680974 ttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 43514714 - 43514784
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||||||||  || ||||| |||  ||||||||| | ||||| || ||||||||||||||||||||||||    
T  43514714 ttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 47210086 - 47209992
Alignment:
Q  101 aaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaagaactttcctcaccaccaccacaaaa 195  Q
    ||||| |||| | |||||||||||  |||  |||| | |||||| |||||||||||||| || |||| |||| |||||||||||||  |||||||    
T  47210086 aaattgagccacatgaacaccttttcccactccttcatcaccacctcacaatgcaagaaaatatgagcagaagtttcctcaccacctgcacaaaa 47209992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 35017804 - 35017733
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| || || ||||||||||||||  | | || || ||||||||||||||||||||||||||    
T  35017804 ttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41327569 - 41327641
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||||||| || |  ||  |||||||||| |||||| ||| ||||||||||  ||||||||||||    
T  41327569 atttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 48463478 - 48463550
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||||| ||||||||    ||||||| |||| |||||| ||||||||||||||    
T  48463478 ttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45745 - 45817
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  45745 atttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 40236991 - 40236919
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40236991 ttaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31513361 - 31513287
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  31513361 atttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31408659 - 31408732
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  31408659 atttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27535259 - 27535331
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||||||| |||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27535259 ttaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 4638227 - 4638297
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| |||||||||||||||||||| | |||||||| |||| |||||||||||||||||||    
T  4638227 ttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10573823 - 10573751
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||||| | | ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10573823 atttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 25664052 - 25663952
Alignment:
Q  155 aagaagatgtgagaagaactttcctcaccaccaccac---aaaaagcacaattctaagaagcaaccggtgttaagacatttctccttgagaaattaatct 251  Q
    |||||||  ||||||||||||||||||||||||||||   |||||||||||||| ||||||||  |||   |||||||||||||||||  |||||| |||    
T  25664052 aagaagacatgagaagaactttcctcaccaccaccaccacaaaaagcacaattcaaagaagcatgcgg---taagacatttctccttgtcaaattagtct 25663956  T
Q  252 ttgt 255  Q
    ||||    
T  25663955 ttgt 25663952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  8 aaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| ||| ||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 44326250 - 44326180
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  44326250 ttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 5810956 - 5811024
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||| ||| |||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||||    
T  5810956 caaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 24001040 - 24001112
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  24001040 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 42538459 - 42538531
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  42538459 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33384945 - 33384870
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaataggg-tgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||| ||||  |||| || |||||||||| |||||||||||| | |||||||||||||||||||    
T  33384945 atttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacattttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5194257 - 5194331
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||||| ||||||| | || |||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  5194257 atttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 26898430 - 26898499
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 72  Q
    |||||||||| ||| ||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||||    
T  26898430 ttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41861731 - 41861674
Alignment:
Q  18 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| || ||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  41861731 taatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 35069793 - 35069721
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||| ||||||||||||||||||||    
T  35069793 ttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 45326092 - 45326020
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||||||||||||||||||  | ||||||| |||| |||||| |||||||| |||||    
T  45326092 ttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 24280645 - 24280696
Alignment:
Q  24 atggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||| |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  24280645 atgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 43343656 - 43343722
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  43343656 caaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 44416966 - 44417032
Alignment:
Q  7 caaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  44416966 caaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 5015467 - 5015395
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  5015467 ttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 9216350 - 9216302
Alignment:
Q  27 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||| | || || ||||||||||||||||||||||||||    
T  9216350 gggtgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 42972924 - 42972852
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| |||||||||| | ||||| || |||||| |||||| ||||||||||||    
T  42972924 ttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32029843 - 32029908
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 66  Q
    |||||||||||| ||| ||||| |||||||||||||| ||||||| || ||||  ||||| |||||    
T  32029843 atttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 43317488 - 43317443
Alignment:
Q  30 tgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  43317488 tgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17208148 - 17208074
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  17208148 atttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32473422 - 32473494
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32473422 ttaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 33855071 - 33855143
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| | ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30622745 - 30622818
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||  ||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  30622745 atttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38470653 - 38470579
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||||| ||||||||| |||||||||||||| |  ||||||| ||||||||||| ||||||||||||||    
T  38470653 atttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 7617205 - 7617133
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  7617205 ttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 2614677 - 2614749
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  2614677 ttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 22512377 - 22512305
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| |||| ||||||||| | ||||| || ||||||||||||||||||||||||||    
T  22512377 ttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 41334691 - 41334763
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| || ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  41334691 ttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 5257067 - 5256997
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  5257067 ttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 18034054 - 18033982
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| || ||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  18034054 ttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 33801541 - 33801469
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| |||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  33801541 ttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25915030 - 25915085
Alignment:
Q  18 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 73  Q
    ||||| || |||||||||||  |||||| || ||||||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 11323 - 11251
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  11323 ttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35482 - 35556
Alignment:
Q  1 atttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    ||||||||| |||||| ||||  ||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  35482 atttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 757 - 685
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  757 ttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 112727 - 112656
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 74  Q
    |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  112727 ttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 14216 - 14288
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  14216 ttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 24544 - 24616
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  24544 ttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 23449 - 23521
Alignment:
Q  3 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 75  Q
    |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  23449 ttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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