View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13527_low_3 (Length: 352)
Name: NF13527_low_3
Description: NF13527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13527_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 18198405 - 18198083
Alignment:
| Q |
17 |
tgaagacataataggagaatctgatccaaaggtcaagacagtactcatttgatgataatgtgaggcatcagaattaaaagaagaagaaactttgttcttg |
116 |
Q |
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| T |
18198405 |
tgaagacatgataggagaatccgatccaaaggtcaagacagtactcatttgatgataatgcgaggcatcagaattaaaagaagaagagactttgttcttg |
18198306 |
T |
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| Q |
117 |
cgacgacctgcgcctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttgacgttgtagt |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18198305 |
cgacgacctgcccctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttgacgttgtagt |
18198206 |
T |
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| Q |
217 |
tgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctgatttctttggagatttttcttgtgacatatcagtttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18198205 |
tgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctggtttctttggagatttttcttgtgacatatcagtttg |
18198106 |
T |
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| Q |
317 |
tttatcaattttagtggaatttg |
339 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
18198105 |
ttcatcaattttagtggaatttg |
18198083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 107 - 325
Target Start/End: Complemental strand, 18230941 - 18230723
Alignment:
| Q |
107 |
tttgttcttgcgacgacctgcgcctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttg |
206 |
Q |
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| T |
18230941 |
tttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttg |
18230842 |
T |
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| Q |
207 |
acgttgtagttgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctgatttctttggagatttttcttgtgaca |
306 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| | |||| |||| |||||||||| |||||||||| |
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| T |
18230841 |
acgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaattacgtcttgtttcattggagatttctcttgtgaca |
18230742 |
T |
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| Q |
307 |
tatcagtttgtttatcaat |
325 |
Q |
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||||| |||||| |||||| |
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| T |
18230741 |
tatcactttgttcatcaat |
18230723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 18193623 - 18193376
Alignment:
| Q |
17 |
tgaagacataataggagaatctgatccaaaggtcaagacagtactcatttgatgataatgtgaggcatcagaattaaaagaagaagaaactttgttcttg |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||| | |||||||||| |
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| T |
18193623 |
tgaagacataacaggagaatctgatccaaaggtcaagacagtactcatttgacgattatgtgaggcatcggaagaaaaagaagag---attttgttcttg |
18193527 |
T |
|
| Q |
117 |
cgacgacctgcgcctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttgacgttgtagt |
216 |
Q |
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|| |||||||| |||| ||||||| |||| ||||||||||| | |||||| ||||| || || ||||||||||||||||| ||||| ||| ||||||| | |
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| T |
18193526 |
cggcgacctgcacctacaagcatacttctagtggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaat |
18193427 |
T |
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| Q |
217 |
tgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaa |
267 |
Q |
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| T |
18193426 |
tattgtagtaacaaaattttgtgtctacgcttttgcatcttggacatggaa |
18193376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 18188382 - 18188135
Alignment:
| Q |
17 |
tgaagacataataggagaatctgatccaaaggtcaagacagtactcatttgatgataatgtgaggcatcagaattaaaagaagaagaaactttgttcttg |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| | ||| ||||| | ||||||||| |
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| T |
18188382 |
tgaagacatattaggagaatctgatccaaaggtcaagacagtactcatttgacaattatgtgaggcatcggaag-ataag--gaagagattttgttctta |
18188286 |
T |
|
| Q |
117 |
cgacgacctgcgcctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttgacgttgtagt |
216 |
Q |
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|| |||||||| |||| |||||| |||||||||||||||| |||||||| ||||| || || |||||||||||||| || ||||| ||| ||||||| | |
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| T |
18188285 |
cggcgacctgcacctacaagcatgcttctcgtggttcctccggaagtccaatatctctgacagtttttgcagaagtgacggggctggttggcgttgtaat |
18188186 |
T |
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| Q |
217 |
tgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaa |
267 |
Q |
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| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
18188185 |
tattgtagtaacaaaattttgtgtccatgcttttgcatcttggacatggaa |
18188135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18231013 - 18230971
Alignment:
| Q |
17 |
tgaagacataataggagaatctgatccaaaggtcaagacagta |
59 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18231013 |
tgaagacatactaggagaatctgatccaaaggtcaagatagta |
18230971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 3775730 - 3775591
Alignment:
| Q |
108 |
ttgttcttgcgacgacctgcgcctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttga |
207 |
Q |
| |
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|||||||| | |||||| ||||||| | ||| ||||||| ||| ||| || | |||||||||||| ||||| || ||||| || || ||||| || || | |
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| T |
3775730 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
3775631 |
T |
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| Q |
208 |
cgttgtagttgttgtagtagcaaaattttgtgtccgtgct |
247 |
Q |
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| T |
3775630 |
cattgtagttattgtagtagcagaatttggtgtccatgct |
3775591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 9431369 - 9431461
Alignment:
| Q |
195 |
cgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctgatttcttt |
287 |
Q |
| |
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||||| || ||||| |||||||||||| | || |||||||||||||| |||||||||||||||||| |||||| | ||||| ||||||| |
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| T |
9431369 |
cgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttcttt |
9431461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 33823891 - 33823834
Alignment:
| Q |
183 |
ttgcagaagtgtcgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgt |
240 |
Q |
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|||||||| || |||||||| ||| ||| |||||||||||||| ||||||||||||| |
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| T |
33823891 |
ttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgt |
33823834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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