View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13527_low_4 (Length: 220)
Name: NF13527_low_4
Description: NF13527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13527_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 43240737 - 43240942
Alignment:
| Q |
1 |
cggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattactacacttcatt |
100 |
Q |
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| T |
43240737 |
cggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatgattgtaaactagacaacattactacacttcatt |
43240836 |
T |
|
| Q |
101 |
aggaaattctatgattgttgaattggctgcaaaaataataaatgccttatcatatctacattggctttttcgattatcttaaataaatgtctcccgtatt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43240837 |
aggaaattccatgattgttgaattggctgcaaaaattataaatgccttatcatatctacattggctttttcgatgatcttaaataaatgtctcccgtatt |
43240936 |
T |
|
| Q |
201 |
atattc |
206 |
Q |
| |
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|||||| |
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| T |
43240937 |
atattc |
43240942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 38927825 - 38927688
Alignment:
| Q |
3 |
gaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattactacacttcattag |
102 |
Q |
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||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||| |
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| T |
38927825 |
gaatttcggatatttttctctattgtac-atcattaatttttaagtcagattatacacttttatgattgtacactagaaaacattact--gtttcattag |
38927729 |
T |
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| Q |
103 |
gaaattctatgattgttgaattggctgcaaaaataataaat |
143 |
Q |
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|| |||| ||||||||||||||| ||||| |||||||||| |
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| T |
38927728 |
gagattccttgattgttgaattggatgcaacaataataaat |
38927688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 43230152 - 43230222
Alignment:
| Q |
136 |
taataaatgccttatcatatctacattggctttttcgattatcttaaataaatgtctcccgtattatattc |
206 |
Q |
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| T |
43230152 |
taataaatgccttatcatatctacattggttttttcaatgatcttgagtaaatgtatcccgcattatattc |
43230222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 43246892 - 43246929
Alignment:
| Q |
136 |
taataaatgccttatcatatctacattggctttttcga |
173 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
43246892 |
taatacatgccttatcatatctacattggctttttcga |
43246929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 43253357 - 43253394
Alignment:
| Q |
136 |
taataaatgccttatcatatctacattggctttttcga |
173 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
43253357 |
taatacatgccttatcatatctacattggctttttcga |
43253394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 3570882 - 3570745
Alignment:
| Q |
3 |
gaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattactacacttcattag |
102 |
Q |
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|
||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||| |
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| T |
3570882 |
gaatttcggatatttttctctattgtac-atcattaatttttaagtcagattatacacttttatgattgtacactagaaaacattact--gtttcattag |
3570786 |
T |
|
| Q |
103 |
gaaattctatgattgttgaattggctgcaaaaataataaat |
143 |
Q |
| |
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|| |||| ||||||||||||||| ||||| |||||||||| |
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| T |
3570785 |
gagattccttgattgttgaattggatgcaacaataataaat |
3570745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 46354251 - 46354114
Alignment:
| Q |
3 |
gaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattactacacttcattag |
102 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||||| |||||||| |
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| T |
46354251 |
gaatttcagctatttttctctattgtac-atcattaatttttaaatcagattatacacttttatgattgtacactagaaaacattact--gtttcattag |
46354155 |
T |
|
| Q |
103 |
gaaattctatgattgttgaattggctgcaaaaataataaat |
143 |
Q |
| |
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|| |||| |||| |||||||||| ||||| |||||||||| |
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| T |
46354154 |
gagattccttgatcgttgaattggatgcaacaataataaat |
46354114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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