View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13528_high_1 (Length: 340)
Name: NF13528_high_1
Description: NF13528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13528_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 46618726 - 46618430
Alignment:
| Q |
15 |
atgaacattatgctacctacagagactcttacctaaaggaatcattggatgcaccatggacttcaatgactactaccttagatgaaactgctttcaaagc |
114 |
Q |
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| T |
46618726 |
atgaacattatgctacctacagagactcttacctaaaggaatcattggatgcaccatggacttcaatgactactaccttagatgaaactgctttcaaagc |
46618627 |
T |
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| Q |
115 |
caaacaacgcctacagaagaaacttggtcacttcttttcctcttccaggtacatccactcctacagaataatacnnnnnnnnnnnnnnnnnnnnnnaaga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
46618626 |
caaacaacgcctacagaagaaacttggtcacttcttttcctcttcaaggtacatccactcctacagaataatac----------ttttttttttttaaga |
46618537 |
T |
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| Q |
215 |
aacaagaaacctgttactcttaatttttagtctaactagctagaatttatacaaattgtctaggcttttatttaattttccacatgtttcttatgtacac |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46618536 |
aacaagaaacctgttagtcttaatttttagtctaactagctagaatttatacaaattgtctaggcttttatttaattttccacatgtttcttatgtacac |
46618437 |
T |
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