View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13528_high_2 (Length: 242)
Name: NF13528_high_2
Description: NF13528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13528_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52375392 - 52375169
Alignment:
| Q |
1 |
cgatcaagaagacctaagattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttcacaaccatga |
100 |
Q |
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| T |
52375392 |
cgatcaagaagacctaagattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttaacaaccatga |
52375293 |
T |
|
| Q |
101 |
aagcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctcc |
200 |
Q |
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| T |
52375292 |
aagcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctcc |
52375193 |
T |
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| Q |
201 |
accagagactccacggtgaccttc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
52375192 |
accagagactccacggtgaccttc |
52375169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 40383778 - 40383984
Alignment:
| Q |
18 |
gattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttcacaaccatgaaagcacttgtggaatcc |
117 |
Q |
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| T |
40383778 |
gattctgtagcttggttgatgaacggtcatcatgacgatgctaccgctctgagcaattctctgcaaaaccttcaccaccatgtaagcgcttgtagagtca |
40383877 |
T |
|
| Q |
118 |
aatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctccaccagagactccacggt |
217 |
Q |
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| T |
40383878 |
agtccagaggttggttcatccaagaacaaaatgattggatcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggt |
40383977 |
T |
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| Q |
218 |
gaccttc |
224 |
Q |
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| T |
40383978 |
gaccttc |
40383984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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