View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13529_high_1 (Length: 1038)
Name: NF13529_high_1
Description: NF13529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13529_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 673; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 7 - 704
Target Start/End: Original strand, 41533305 - 41534002
Alignment:
| Q |
7 |
agttctcactaatggtggtctttgaacccgtttcttcttcaccgcaaccatttcctccttcgagttcgattcaacttcactaggggaacacggaacttgg |
106 |
Q |
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| T |
41533305 |
agttctcactaatggtggtctttgaacccgtttcttcttcaccgcaaccatttcctccttcgagttcgattcaacttcactaggggaacacggaacttgg |
41533404 |
T |
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| Q |
107 |
ctgcaccacaacgtagagaatcccttctccgatacaccactcaacaaaccatgaaaactcaccggagttaacccagcagcaacatcacctagaagattca |
206 |
Q |
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| T |
41533405 |
ctgcaccacaacgtagagaatcccttctccgatacaccactcaacaaaccatgaaaactcaccggagttaacccagcagcaacatcacctagaagattca |
41533504 |
T |
|
| Q |
207 |
aaggataataataaccgttagnnnnnnncttcttacgagcataagaacactcttcatcatcaccaactgagtcagcgagtttacaccgtttcaaactcgg |
306 |
Q |
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| T |
41533505 |
aaggataataataaccgttagtttttttcttcttacgagcataagaacactcttcatcatcaccaactgagtcagcgagtttacaccgtttcaaactcgg |
41533604 |
T |
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| Q |
307 |
catttgagatttcaagttcctcttaataatcattccttcttcaaaaacaaaaattgaagtaacgggtcgtgttaaaatcaaaagttaaacaaccccagaa |
406 |
Q |
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| T |
41533605 |
catttgagatttcaagttcctcttaataatcattccttcttcaaaaacaaaaattgaagtaacgggtcgtgttaaaatcaaaagttaaacaaccccagaa |
41533704 |
T |
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| Q |
407 |
acgaaatttaaacttccaagctcaaaaacaacacaaacctcataaaccctaattgcaaattgagttttgaagaaacagagcaatcgatgaagttgaaagc |
506 |
Q |
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| T |
41533705 |
acgaaatttaaacttccaagctcaaaaacaacacaaacctcataaaccctaattgcaaattgagttttgaagaaacagagcaatcgatgaagttgaaagc |
41533804 |
T |
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| Q |
507 |
aagttcgaattttgagatgataatttaatagaagagacaagagggttataagaaaaagagatgaaatcgaaaacgagaatgtcagaaaacgtgatcgtga |
606 |
Q |
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| T |
41533805 |
aagttcgaattttgagatgataatttaatagaagagacaaaagggttataagaaaaagagatgaaatcgaaaacgagaatgtcagaaaacgtgatcgtga |
41533904 |
T |
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| Q |
607 |
agatcgaatgagcagaaaaatgaagaaatagggatctgttcgtagtaagcttcagaaaacagacagagagaagtttacaaaagaaaaaacataaacat |
704 |
Q |
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| T |
41533905 |
agatcgaatgagcagaaaaatgaagaaatagggatctgttcgtagtaagcttcagaaaacagacagagagaagtttacaaaagaaaaaacataaacat |
41534002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 887 - 956
Target Start/End: Original strand, 41534197 - 41534266
Alignment:
| Q |
887 |
tattagcgttatcttgagtgtggtgcgtagtattacctgtttgtctgtgctgctgctaatttgcgcatca |
956 |
Q |
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| T |
41534197 |
tattagcgttatcttgagtgtggtgcgtagtattacctgtttgtgtgtgatgatgctaatttgcgcatca |
41534266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 981 - 1027
Target Start/End: Original strand, 41534281 - 41534327
Alignment:
| Q |
981 |
ggtaatgcaaattcttctttctttcaatcaaagtcgtgaggtgaggt |
1027 |
Q |
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| T |
41534281 |
ggtaatgcaaattcttctttctttcaatcaaagtcgtgaggtgaggt |
41534327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 985 - 1022
Target Start/End: Original strand, 41542516 - 41542553
Alignment:
| Q |
985 |
atgcaaattcttctttctttcaatcaaagtcgtgaggt |
1022 |
Q |
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| T |
41542516 |
atgcaaattcttctttctttctttcaaagtcgtgaggt |
41542553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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