View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13529_high_12 (Length: 348)
Name: NF13529_high_12
Description: NF13529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13529_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 48070443 - 48070106
Alignment:
| Q |
1 |
aaatcaaaatcacctttgggtttattataaggactactataacccattgggctatcagtttcaacagaagcccttgtaatagttggacttctattctcaa |
100 |
Q |
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| T |
48070443 |
aaatcaaaatcacctttgggtttattataaggactactataacccattgggctatcagtttcaacagaagcccttgtaatagttggacttctattctcaa |
48070344 |
T |
|
| Q |
101 |
acatgatttttgcatccaaaggtccagatattggactcttggtgaatcttccatcaatagccctacttcttaatggacttctattagtataaatcatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48070343 |
acatgatttttgcatccaaaggtccagatattggactcttggtgaatcttccatcaatagccctacttcttaatggacttctattagtataaatcatcat |
48070244 |
T |
|
| Q |
201 |
tctctcattcatcaatcttccatcaattggtcctgataacttcaatgccttattattgctgaccattttctgctcatgcattcttccatctaatggtcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48070243 |
tctctcattcatcaatcttccatcaattggtcctgataacttcaatgccttattattgctcaccattttctgctcatgcattcttccatctaatggtcct |
48070144 |
T |
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| Q |
301 |
gaatatggcattgttctgcttctatatataggtctctg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48070143 |
gaatatggcattgttctgcttctatatataggtctctg |
48070106 |
T |
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