View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13529_high_16 (Length: 340)

Name: NF13529_high_16
Description: NF13529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13529_high_16
NF13529_high_16
[»] chr8 (2 HSPs)
chr8 (97-270)||(12933811-12933984)
chr8 (210-247)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (97-270)||(28608621-28608794)
chr4 (120-270)||(14177081-14177231)
chr4 (209-262)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (240-277)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (240-277)||(796698-796735)
chr6 (240-277)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (240-277)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  97 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 195  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  196 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 270  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  210 ggttgctccatataaatctcctcttccaaatctccatg 247  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  97 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 195  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  196 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 270  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 270
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  120 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 218  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  219 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 270  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  209 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 262  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  240 tctccatgaagaaatgcagttttcacatccaactgctc 277  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  240 tctccatgaagaaatgcagttttcacatccaactgctc 277  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  240 tctccatgaagaaatgcagttttcacatccaactgctc 277  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  240 tctccatgaagaaatgcagttttcacatccaactgctc 277  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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