View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13529_high_22 (Length: 310)
Name: NF13529_high_22
Description: NF13529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13529_high_22 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 44834489 - 44834791
Alignment:
| Q |
8 |
aagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatgg |
107 |
Q |
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| T |
44834489 |
aagcaaaggcatcaaagtgttgctatctctcggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatgg |
44834588 |
T |
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| Q |
108 |
aacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactatgatg |
207 |
Q |
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| T |
44834589 |
aacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactatgatg |
44834688 |
T |
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| Q |
208 |
accttgcaagagcacttaatgcttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctat |
307 |
Q |
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| T |
44834689 |
accttgcaagagcacttaatggttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctat |
44834788 |
T |
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| Q |
308 |
taa |
310 |
Q |
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||| |
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| T |
44834789 |
taa |
44834791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 44817132 - 44817437
Alignment:
| Q |
8 |
aagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatgg |
107 |
Q |
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| T |
44817132 |
aagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctctactcgtcttacgacgcctcacagcttgcaaactacctatgg |
44817231 |
T |
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| Q |
108 |
aacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtggtgaacactat---g |
204 |
Q |
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| T |
44817232 |
aacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtcaatattggg |
44817331 |
T |
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| Q |
205 |
atgaccttgcaagagcacttaatgcttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggc |
304 |
Q |
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| T |
44817332 |
atgaacttgcaaaagcacttgatgggtttagttcacagaagaaagtttatttgtctgcagcaccacaatgtccttaccctgatgctcatttggattcagc |
44817431 |
T |
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| Q |
305 |
tattaa |
310 |
Q |
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|||||| |
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| T |
44817432 |
tattaa |
44817437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 44838060 - 44838142
Alignment:
| Q |
103 |
tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa |
185 |
Q |
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| T |
44838060 |
tatggaacactttcttgggtggcaagtcatcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
44838142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 44849147 - 44849229
Alignment:
| Q |
103 |
tatggaacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaa |
185 |
Q |
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| T |
44849147 |
tatggaacactttcttgggtggcacgtcatattcaagaccatttggtgatgctgtgttagatggcatagattttgacattgaa |
44849229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 17571172 - 17570953
Alignment:
| Q |
8 |
aagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatgatgccacgcaggttgcaaattacctatgg |
107 |
Q |
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|||||||||||||||||||||||| | | | | ||| || | |||||||||||||| ||| || | || |||||||| ||||||| ||||||||| |
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| T |
17571172 |
aagcaaaggcatcaaagtgttgctctttatcgaaggcggcgttggaagctactctctcaactcgtcttacgacaccacgcagcttgcaaactacctatgg |
17571073 |
T |
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| Q |
108 |
aacaatttcttgggtggcacgtcatcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctgg---tggtgaacactatg |
204 |
Q |
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| T |
17571072 |
aacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtgaacattggg |
17570973 |
T |
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| Q |
205 |
atgaccttgcaagagcactt |
224 |
Q |
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| T |
17570972 |
atgaacttgcaaaagcactt |
17570953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 47980207 - 47980246
Alignment:
| Q |
147 |
ggtgatgctgttttggatggaattgattttgatattgaag |
186 |
Q |
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| T |
47980207 |
ggtgatgctgttttggatggcattgattttgacattgaag |
47980246 |
T |
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