View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13529_high_5 (Length: 456)
Name: NF13529_high_5
Description: NF13529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13529_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 42038514 - 42038840
Alignment:
| Q |
24 |
acgatgtggacagagcagatcctgtggagccaggcctagcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacac |
123 |
Q |
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| T |
42038514 |
acgatgtggacagagcagatcctgtggagccaggccttgcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacac |
42038613 |
T |
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| Q |
124 |
ctacatctgctgcaactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcat |
223 |
Q |
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| T |
42038614 |
ctacatctgctgcaactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcat |
42038713 |
T |
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| Q |
224 |
ggcaatgtcaaaggtacaaccacactaagtacgtgtctgatatcacggtggttttgccagaatcacgttgagcccatgtgattgtggcaaagtcactcac |
323 |
Q |
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| T |
42038714 |
ggcaatgtcaaaggtacaaccacactaagtacgtgtctgatatcacagtggttttgccagaatcacgttgagccgatgtgattgtggcaaagtcactgac |
42038813 |
T |
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| Q |
324 |
ttagtcagtgtgatactgaacatgtac |
350 |
Q |
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| T |
42038814 |
ttagtcactgggatactgaacatgtac |
42038840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 323 - 443
Target Start/End: Original strand, 42038845 - 42038965
Alignment:
| Q |
323 |
cttagtcagtgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
422 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038845 |
cttagtcactgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
42038944 |
T |
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| Q |
423 |
gtgcagcttactttgatgatg |
443 |
Q |
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| T |
42038945 |
gtgcagcgtactttgttgatg |
42038965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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