View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1352_high_4 (Length: 382)
Name: NF1352_high_4
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1352_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 26986674 - 26986912
Alignment:
| Q |
4 |
ataaaagtattttttacggttgaatcagtaaatcttatcatatctcattgttacaccaaaaatttagtatatgtttgagtgcgtaaaaatttaaattgag |
103 |
Q |
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| T |
26986674 |
ataaaagtattttttacaattgaatcagtaaatatcatcatatctcattgttacaccagaaatttggtatatgtttgagtgcgtaaaaatttaaattgag |
26986773 |
T |
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| Q |
104 |
atagtaatatatgttttcttttgactagcttaatcaaattagtttcaagttatctttgttttggttatgaatgccctccaattcaacannnnnnnnatat |
203 |
Q |
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| T |
26986774 |
atagtaatatttgttttcttttgaccaacttaatcaaattagtttcaagttatctttgttttggttatgaatgccctccaattcaacattttttttatat |
26986873 |
T |
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| Q |
204 |
actaaacgagtcactaataacttttttcagttccttcaa |
242 |
Q |
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| T |
26986874 |
actaaacgagtcactaataacttttttcagttccttcaa |
26986912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 26986997 - 26987050
Alignment:
| Q |
325 |
gaggaaaaagtgtgcttctaaaaacctcttcctcaataactattcatctcactc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26986997 |
gaggaaaaagtgtgcttctaaaaacctcttcctcaataactattcttctcactc |
26987050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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