View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1352_low_1 (Length: 785)
Name: NF1352_low_1
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1352_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 13 - 647
Target Start/End: Original strand, 44000055 - 44000692
Alignment:
| Q |
13 |
aatatacgacatctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000055 |
aatatacgacatctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaa |
44000154 |
T |
|
| Q |
113 |
tgcttacataagcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44000155 |
tgcttacataagcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaac |
44000254 |
T |
|
| Q |
213 |
atgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctc |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000255 |
atgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctc |
44000354 |
T |
|
| Q |
313 |
acttccactcaataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatg |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000355 |
acttccactcaataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatg |
44000454 |
T |
|
| Q |
413 |
cagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000455 |
cagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtt |
44000554 |
T |
|
| Q |
513 |
tgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagcagaaatcttattccatgcattac---nnnnnnnngtatatccacaca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44000555 |
tgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagcagaaatcttattccatgcattacaaaaaaaaaaagtatatccacaca |
44000654 |
T |
|
| Q |
610 |
cagttacaggataaggaattgaataccaagcggtgagc |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44000655 |
cagttacaggataaggaattgaataccaagcggtgagc |
44000692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 688 - 785
Target Start/End: Original strand, 44000736 - 44000833
Alignment:
| Q |
688 |
tagggagcgagagagcaaacgagaaagtgtgcgagctgccatgatgagagcacgtgaatgtgattgcctctcggtgtttcttgttcttgtaatgattt |
785 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
44000736 |
tagggagcgagagagcaaacgagaaagtgtgcgagctgccatgatgagagcacgtgaatgtgattgcctgtcggtgtttcttgttcttgtaatgattt |
44000833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 44 - 336
Target Start/End: Original strand, 8357531 - 8357822
Alignment:
| Q |
44 |
aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg |
143 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
8357531 |
aataagtcatcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaaggaaatgcttacataagcattcattttaggccaagg |
8357630 |
T |
|
| Q |
144 |
tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca |
243 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8357631 |
tccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca |
8357730 |
T |
|
| Q |
244 |
agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt |
336 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||||||||||||| |||||| ||||||||| |
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| T |
8357731 |
agtgttggaaatgttttccctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgattttt |
8357822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 44 - 336
Target Start/End: Complemental strand, 39294195 - 39293904
Alignment:
| Q |
44 |
aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg |
143 |
Q |
| |
|
||||||| ||||||||||||| || |||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39294195 |
aataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaaggaaatgcttacataagcactcattttaggtcaagg |
39294096 |
T |
|
| Q |
144 |
tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca |
243 |
Q |
| |
|
|||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39294095 |
tccattatgaaaggcctcgcaagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca |
39293996 |
T |
|
| Q |
244 |
agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt |
336 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | |||| ||||||||| |
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|
| T |
39293995 |
agtgttggaaatgttttccctgaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgattttt |
39293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 380 - 587
Target Start/End: Complemental strand, 5572672 - 5572465
Alignment:
| Q |
380 |
taacaagcaa-cgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatca |
478 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||||| ||||||||||| |
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|
| T |
5572672 |
taacaagcaaacaatctttatacattacctgatgcatcatccacaaattttccatttataagatgttgtgtatagttcattgaaacttatggagtaatca |
5572573 |
T |
|
| Q |
479 |
attcctgaacagctgcagcagtgctaaatctgtttgtgtttatcaacccttcagattttcttcctgaggtgaaacaaaacataaagcagaaatcttattc |
578 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
5572572 |
attcctcaacagctgtagcattgctaaatctgtttgtgtttatcaacccttcag-ttttcttcctgaggtaaaacaaaacataaaccagaaatcttattc |
5572474 |
T |
|
| Q |
579 |
catgcatta |
587 |
Q |
| |
|
||||||||| |
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|
| T |
5572473 |
catgcatta |
5572465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 35212717 - 35212811
Alignment:
| Q |
136 |
ggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccc |
230 |
Q |
| |
|
||||| ||||| | |||||| |||| | |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35212717 |
ggccatggtccttcatcaaaagcctttctagctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
35212811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 26894437 - 26894377
Alignment:
| Q |
205 |
tcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| |||| |
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|
| T |
26894437 |
tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctg |
26894377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 34947630 - 34947670
Alignment:
| Q |
341 |
acaaaccttaaaacgactattattttgagacggagggagtaa |
382 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
34947630 |
acaaaccttaaa-cgactattatttagagacggagggagtaa |
34947670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 381
Target Start/End: Original strand, 32440274 - 32440303
Alignment:
| Q |
352 |
aacgactattattttgagacggagggagta |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
32440274 |
aacgactattattttgagacggagggagta |
32440303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 49223972 - 49223939
Alignment:
| Q |
351 |
aaacgactattattttgagacggagggagtaaca |
384 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
49223972 |
aaacgactattatttagagacggagggagtaaca |
49223939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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