View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1352_low_12 (Length: 251)
Name: NF1352_low_12
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1352_low_12 |
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| [»] chr6 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 26008560 - 26008339
Alignment:
| Q |
30 |
tatctaatgtcccgattaatataagacttcactaaaaaagattgcaaaggacatattcagactnnnnnnnntaacggttgcagttgcatgtaagaaaacc |
129 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
26008560 |
tatctaatgtcccgatttatataagacttcactaaaaaagattgcaaaggacatattcagactaaaaaaaataacagttgcagttgcatgtaagaaaacc |
26008461 |
T |
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| Q |
130 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaaccttccattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008460 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaaccttccattg |
26008361 |
T |
|
| Q |
230 |
atccccatgggttgattgtcca |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
26008360 |
atccccatgggttgattgtcca |
26008339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 26126946 - 26126725
Alignment:
| Q |
30 |
tatctaatgtcccgattaatataagacttcactaaaaaagattgcaaaggacatattcagactnnnnnnnntaacggttgcagttgcatgtaagaaaacc |
129 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
26126946 |
tatctaatgtcccgatttatataagacttcactaaaaaagattgcaaaggacatattcagactaaaaaaaataacagttgcagttgcatgtaagaaaacc |
26126847 |
T |
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| Q |
130 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaaccttccattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126846 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaaccttccattg |
26126747 |
T |
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| Q |
230 |
atccccatgggttgattgtcca |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
26126746 |
atccccatgggttgattgtcca |
26126725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 25573925 - 25573798
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25573925 |
aaaaccggttcttattcatgtaccccatcataactgttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
25573826 |
T |
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| Q |
224 |
ccattgatccccatgggttgattgtcca |
251 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25573825 |
ccattgatccccatgggttgattgtcca |
25573798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 34986615 - 34986506
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
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||||| ||||||||| || ||||||||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||| |||| || || ||||||||| |
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| T |
34986615 |
aaaacaggttcttatccaggtaccccatcataactgttccagttttgtatcatagggaactcaattccacccttacatattgttccatctctgtaacctt |
34986516 |
T |
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| Q |
224 |
ccattgatcc |
233 |
Q |
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|||||||||| |
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| T |
34986515 |
ccattgatcc |
34986506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 45049656 - 45049435
Alignment:
| Q |
30 |
tatctaatgtcccgattaatataagacttcactaaaaaagattgcaaaggacatattcagactnnnnnnnntaacggttgcagttgcatgtaagaaaacc |
129 |
Q |
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|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||| |
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| T |
45049656 |
tatctaatgtcccgatttatagaagacttcactaaaaaagattggaaaggacatattcagactaaaaagaataacagttgcagttgcacgtaagaaaacc |
45049557 |
T |
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| Q |
130 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaaccttccattg |
229 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45049556 |
ggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcagatccacccttacatactgtttcagctttgtaaccttccattg |
45049457 |
T |
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| Q |
230 |
atccccatgggttgattgtcca |
251 |
Q |
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||||||||||||||| |||||| |
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| T |
45049456 |
atccccatgggttgactgtcca |
45049435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 39712218 - 39712113
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
| |
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||||| |||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | ||||||||| || |||| |||| |
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| T |
39712218 |
aaaacaggttcttatttatgtactccatcataacagttgcagttttgtatcatagtgaactcaaatccatccttatacactgtttcatctatgtatcctt |
39712119 |
T |
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| Q |
224 |
ccattg |
229 |
Q |
| |
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| |||| |
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| T |
39712118 |
cgattg |
39712113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 14937392 - 14937283
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
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||||| ||||||||| || ||||||||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||| |||| || || ||||||||| |
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| T |
14937392 |
aaaacaggttcttatccaggtaccccatcataactgttccagttttgtatcatagggaactcaattccacccttacatattgttccatctctgtaacctt |
14937293 |
T |
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| Q |
224 |
ccattgatcc |
233 |
Q |
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|||||||||| |
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| T |
14937292 |
ccattgatcc |
14937283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 34028311 - 34028202
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
| |
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||||| ||||||| | || ||||||||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||| ||||||| || ||||||||| |
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| T |
34028311 |
aaaacaggttcttgtccaggtaccccatcataactgttccagttttgtatcatagggaactcaattccacccttacatattgtttcatctctgtaacctt |
34028212 |
T |
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| Q |
224 |
ccattgatcc |
233 |
Q |
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|||||||||| |
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| T |
34028211 |
ccattgatcc |
34028202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 1060402 - 1060511
Alignment:
| Q |
124 |
aaaaccggttcttattcatgtaccccatcataacagttgcaatttcgtatcatagtgaactcaaatccacccttacatactgtttcagctttgtaacctt |
223 |
Q |
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||||| ||||||| | || ||||||||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||| ||||||| || ||||||||| |
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| T |
1060402 |
aaaacaggttcttgtccaggtaccccatcataactgttccagttttgtatcatagggaactcaattccacccttacatattgtttcatctctgtaacctt |
1060501 |
T |
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| Q |
224 |
ccattgatcc |
233 |
Q |
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|||||||||| |
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| T |
1060502 |
ccattgatcc |
1060511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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