View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1352_low_3 (Length: 446)

Name: NF1352_low_3
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1352_low_3
NF1352_low_3
[»] chr5 (4 HSPs)
chr5 (110-269)||(21156799-21156973)
chr5 (1-78)||(21156690-21156767)
chr5 (308-349)||(21157014-21157055)
chr5 (175-219)||(39481161-39481205)
[»] chr4 (3 HSPs)
chr4 (1-82)||(4117401-4117482)
chr4 (146-269)||(4117531-4117668)
chr4 (308-349)||(4117709-4117750)
[»] chr1 (1 HSPs)
chr1 (157-221)||(47933927-47933991)
[»] chr8 (1 HSPs)
chr8 (125-216)||(30849743-30849834)
[»] scaffold0317 (1 HSPs)
scaffold0317 (159-212)||(19233-19286)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 110 - 269
Target Start/End: Original strand, 21156799 - 21156973
Alignment:
Q  110 acttttaacagtacacaaatcacaccaccgccacca-ccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgt 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156799 acttttaacagtacacaaatcacaccaccgccaccatccagcacctcgcactcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgt 21156898  T
Q  209 cacca------------ccaccgtcctcacc--ctctcgcctccgtatttgttctctctgcctcacactcttcac 269  Q
    |||||            ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  21156899 caccaccaccaccgttgccaccgtcctcaccctctctcgcctctgtatttgttctctctgcctcacactcttcac 21156973  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 21156690 - 21156767
Alignment:
Q  1 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156690 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt 21156767  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 21157014 - 21157055
Alignment:
Q  308 gcagtaatttcacagatgtcggaatgatgcgacggcggaaac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21157014 gcagtaatttcacagatgtcggaatgatgcgacggcggaaac 21157055  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 39481205 - 39481161
Alignment:
Q  175 attaacgtcatctatcaccatatcatctcaccgtcaccaccaccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  39481205 attaacgtcatctatcaccatctcatctcaccgtcaccaccaccg 39481161  T

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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4117401 - 4117482
Alignment:
Q  1 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga 82  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117401 agttatattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga 4117482  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 4117531 - 4117668
Alignment:
Q  146 ccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacca------------ccaccgtcctcacc--ctct 231  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||  ||||    
T  4117531 ccagcacctcgctctcaaatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccacctttgccaccgtcctcaccctctct 4117630  T
Q  232 cgcctccgtatttgttctctctgcctcacactcttcac 269  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4117631 cgcctctgtatttgttctctctgcctcacactcttcac 4117668  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 4117709 - 4117750
Alignment:
Q  308 gcagtaatttcacagatgtcggaatgatgcgacggcggaaac 349  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  4117709 gcagtaatttcacagatgtcagaatgatgctacggcggaaac 4117750  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 47933991 - 47933927
Alignment:
Q  157 ctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccgtc 221  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  47933991 ctctcagatctgaacaccattaacgtcgtctattaccatctcatctcaccgtcaccaccatcgtc 47933927  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 30849743 - 30849834
Alignment:
Q  125 caaatcacaccaccgccaccaccagcacgtcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccacca 216  Q
    |||||||||||||||  || ||||  || || |||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||||||    
T  30849743 caaatcacaccaccgtgactaccacaacctcactctcagatcagaacaccattaacatcatctattaccatctcatctcaccgtcaccacca 30849834  T

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Target: scaffold0317 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 19233 - 19286
Alignment:
Q  159 ctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc 212  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19233 ctcaaatctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 19286  T

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