View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1352_low_6 (Length: 364)
Name: NF1352_low_6
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1352_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 8738658 - 8739005
Alignment:
| Q |
9 |
caaacctcgtctttattttctttgcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatc |
108 |
Q |
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| T |
8738658 |
caaacctcgtctttattttctttgcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatc |
8738757 |
T |
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| Q |
109 |
atatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaac--agctagggctttggaaagctact |
206 |
Q |
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| T |
8738758 |
acatgacccggaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctact |
8738857 |
T |
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| Q |
207 |
ggaattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccctg |
306 |
Q |
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| T |
8738858 |
ggaattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccatg |
8738957 |
T |
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| Q |
307 |
ttaggaccaattgggttatacatgagtatcatgatgctgtcacctttg |
354 |
Q |
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| T |
8738958 |
ttaggaccaactgggttatacatgagtatcatgatgctgtcacctttg |
8739005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 14372505 - 14372433
Alignment:
| Q |
102 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
174 |
Q |
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| T |
14372505 |
taaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa |
14372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 8705222 - 8705294
Alignment:
| Q |
102 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
174 |
Q |
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| T |
8705222 |
taaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa |
8705294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 8740276 - 8740370
Alignment:
| Q |
80 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
174 |
Q |
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| T |
8740276 |
tctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
8740370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 8723641 - 8723729
Alignment:
| Q |
86 |
tcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
174 |
Q |
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| T |
8723641 |
tcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaa |
8723729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 8690920 - 8691015
Alignment:
| Q |
80 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac |
175 |
Q |
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| T |
8690920 |
tctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac |
8691015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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