View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1352_low_9 (Length: 268)
Name: NF1352_low_9
Description: NF1352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1352_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 3984482 - 3984682
Alignment:
| Q |
59 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttctt------catcttcatcttcatcttca |
152 |
Q |
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| T |
3984482 |
gtaatgttgataactcgaatgttaatcgtggttacttacatcagactaca---ttgtgcctaaatcaacttcttcatcttcatcttcgtcttcatcttca |
3984578 |
T |
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| Q |
153 |
gctgcagtaaggaaatacataggataatactaagcagcacagtcctcttccatttgttaatatgatctaacaataccatttgctcaacaaaattgtcata |
252 |
Q |
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| T |
3984579 |
gctgcagtaaggaaatacataggatgatgctaagcagcacagtcctcttccatttgttaatacgatcaaacaattccatttgctcaacgaaattgtcata |
3984678 |
T |
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| Q |
253 |
tatt |
256 |
Q |
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|||| |
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| T |
3984679 |
tatt |
3984682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 4007485 - 4007574
Alignment:
| Q |
141 |
tcttcatcttcagctgcagtaaggaaatacataggataatactaagcagcacagtcctcttccatttgttaatatgatctaacaataccattt |
233 |
Q |
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| T |
4007485 |
tcttcatcttcaactgtaggagggaaatacataggatgatacta---agcacagtcctattccatttgttcatataatcaaacaattccattt |
4007574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3984404 - 3984445
Alignment:
| Q |
12 |
taatatattttaatggactgcttatagttgtgttttaaagca |
53 |
Q |
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| T |
3984404 |
taatatattttaatggactgcttatagttttgttttaaagca |
3984445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 3958088 - 3958039
Alignment:
| Q |
91 |
tacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
140 |
Q |
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| T |
3958088 |
tacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttca |
3958039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 3958220 - 3958139
Alignment:
| Q |
59 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
140 |
Q |
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| T |
3958220 |
gtaatttttataactcgaatgttaagcatgtctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttca |
3958139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 3998450 - 3998531
Alignment:
| Q |
59 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
140 |
Q |
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| T |
3998450 |
gtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttca |
3998531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 3998520 - 3998588
Alignment:
| Q |
141 |
tcttcatcttcagctgcagtaaggaaatacataggataatactaagcagcacagtcctcttccatttgttaa |
212 |
Q |
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| T |
3998520 |
tcttcatcttcaactgtaggaaggaaatacataggacgatacta---agcacagtcctattccatttgttaa |
3998588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 4022628 - 4022677
Alignment:
| Q |
91 |
tacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
140 |
Q |
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| T |
4022628 |
tacttacatcaatctatagacttgtgactaaatcaacttcttcatcttca |
4022677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 4014976 - 4015016
Alignment:
| Q |
13 |
aatatattttaatggactgcttatagttgtgttttaaagca |
53 |
Q |
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| T |
4014976 |
aatatattttaatggactacttatagttttgttttaaagca |
4015016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 4015035 - 4015107
Alignment:
| Q |
59 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttg-tgcctaaatcaacttc |
130 |
Q |
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| T |
4015035 |
gtaatgttgagagctcgactgttaaccgtatttacttacatcaaactatagacttgttgtctaaatcaacttc |
4015107 |
T |
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