View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1353-INSERTION-1 (Length: 710)
Name: NF1353-INSERTION-1
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353-INSERTION-1 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Complemental strand, 42683113 - 42682416
Alignment:
| Q |
8 |
aattgagagcgattgacaacagacacctatgagacccagtagagaaatctcacattctgtgttagcttgtctggtattccatatccttaaaccaaaaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42683113 |
aattgagagcgattgacaacagacacctatgagacccagtagagaaatctcacattctgtgttagcttgtctggtattccatatccttaaaccaaaaacc |
42683014 |
T |
|
| Q |
108 |
aatattgcaattgaaacaaacaatgttaagatgttcacgatttggatcaagatgttgcataattgatcattcttgtatttgtcacnnnnnnnn-ataatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
42683013 |
aatattgcaattgaaacaaacaatgttaagacgttcacgatttggatcaagatgttgcataattgaccattcttgtatttgtcactttttttttataatc |
42682914 |
T |
|
| Q |
207 |
catgtccttaatccctgggttggcttgttccattcttgatgatggtgaaataaaattgtgtattgatacgaaagaatgtgatgaaaaagaaaactgacga |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42682913 |
catgttcttaatccctgggttggcttgttccattcttgatgatggtgaaataaaattgtgtattgatacgaaagaatgtgatgaaaaagaaaactgacga |
42682814 |
T |
|
| Q |
307 |
gnnnnnnnactaggtttttcttgtttgttttctaggacagataatgtatatgttaagacagaaattga-agcaaggaaaacatcaataataggaatcaat |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
42682813 |
gtttttttactaggtttttcttgtttgttttctaggacaggtaatgtatatgttaagacagaaattgacaacaagggaaacattaataataggaatcaat |
42682714 |
T |
|
| Q |
406 |
accagaactaatttcaacttaaattatacacaattcaaactagattttggcaaaaagttacaagtttcaagctatgaaactaagacacttctacggtgca |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
42682713 |
accagaactaatttcaacttaaattatacacaattcaaactagattttggcaaaaagttacaagttttaagctataaaactaaggcacttctacggtgca |
42682614 |
T |
|
| Q |
506 |
gttaggaaagtgannnnnnnnnnnnngaaaaattattttgtttagccaatagtataacatctgcaaaagggaattttggcatatcagaattcttacatat |
605 |
Q |
| |
|
||||||||| || |||| |||||||| ||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42682613 |
gttaggaaaccgactttttttt-----aaaagttattttggttaaccaataatataacatctacaaaagggaattttggcgtatcagaattcttacatat |
42682519 |
T |
|
| Q |
606 |
acagttgtcaatgttctgttataatttgaaggcgcatatactgattttaaataaatgatgctacaaaccggagagtgctagatgttttttcaagattgat |
705 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
42682518 |
acagttgtcaatgttctgttataattcgaaggcgcatatactgattttaaataaatgatgctacaaactggagagtgctagatgttttttcacgattgat |
42682419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 533 - 673
Target Start/End: Complemental strand, 3859389 - 3859248
Alignment:
| Q |
533 |
aaaaattattttgtttagccaatagtataacatctgcaaaagggaattttggcatatcagaattcttacatatacagttgtcaatgttctgttataattt |
632 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
3859389 |
aaaagttattttgtttagccaatagtataacatctgcagaagggaattttggtgtatcagaattcttatatattccgttgtcaatgttctgttataattt |
3859290 |
T |
|
| Q |
633 |
gaaggcgcata-tactgattttaaataaatgatgctacaaac |
673 |
Q |
| |
|
|||||| | || |||||||||||||||||| ||||||||||| |
|
|
| T |
3859289 |
gaaggctcctattactgattttaaataaattatgctacaaac |
3859248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 573 - 673
Target Start/End: Original strand, 44595743 - 44595845
Alignment:
| Q |
573 |
agggaattttgg-catatcagaattcttacatatacagttgtcaatgttctgttataatttgaaggcgcat-atactgattttaaataaatgatgctaca |
670 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
44595743 |
agggaattttgggcgtatcagaattcttatatatacagatgtcaatgttctgttataatttgaaggctcctgttactgattttaaataaatgatgctaca |
44595842 |
T |
|
| Q |
671 |
aac |
673 |
Q |
| |
|
||| |
|
|
| T |
44595843 |
aac |
44595845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 15651499 - 15651470
Alignment:
| Q |
534 |
aaaattattttgtttagccaatagtataac |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15651499 |
aaaattattttgtttagccaatagtataac |
15651470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 667
Target Start/End: Complemental strand, 30578857 - 30578783
Alignment:
| Q |
594 |
attcttacatatacagttgtcaatgttctgttataatttgaaggcgcata-tactgattttaaataaatgatgct |
667 |
Q |
| |
|
||||||| || |||| ||||||| |||||||||||||||||||| | || ||||||||||||||| |||||||| |
|
|
| T |
30578857 |
attcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattttaaatatatgatgct |
30578783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 563
Target Start/End: Complemental strand, 15964445 - 15964414
Alignment:
| Q |
532 |
gaaaaattattttgtttagccaatagtataac |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15964445 |
gaaaaattattttgtttagccaatagtataac |
15964414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 563
Target Start/End: Complemental strand, 66115 - 66085
Alignment:
| Q |
533 |
aaaaattattttgtttagccaatagtataac |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
66115 |
aaaaattattttgtttagccaatagtataac |
66085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University