View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353-INSERTION-4 (Length: 461)
Name: NF1353-INSERTION-4
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353-INSERTION-4 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 24887330 - 24887004
Alignment:
| Q |
30 |
ttatttggaagttcatcccaaccattgttggacatattttgctggatggacaaacaaatttgcagctatttgtctattttggtcaactcacttttcgagg |
129 |
Q |
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| T |
24887330 |
ttatttggaagttcatcccaaccattgttggacatattttgctggatggacaaacaaatttgcagctatttgtctattttggtcaactcacttttggagt |
24887231 |
T |
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| Q |
130 |
agagacaataattaaaatcatatacatccttatacctttttatttggtttgattaaacagtcagtccaatcatcgtacttctttccacactacaaacttc |
229 |
Q |
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| T |
24887230 |
agagacaataattaaaatcatatacatccttatacttttttatttggtttgattaaacagtcagtccagtcatcgtacttctttccacactacaaacttc |
24887131 |
T |
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| Q |
230 |
ttacatcttaatattattatcttttgcacacttgccttttcgtgatataaaaagaaagttaaatagtcctcttaaaacattttattaaggaaactaatat |
329 |
Q |
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| T |
24887130 |
ttacatcttaatattattatctttttcacacttgccttttcgtgatataaaaagaaagttaaatagtgctcttaaaacattttattaaggaaactaatat |
24887031 |
T |
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| Q |
330 |
aaaaatatttgttgaaaaatggtaaaa |
356 |
Q |
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| T |
24887030 |
aaaaatatttgttgaaaaatggtaaaa |
24887004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 24886943 - 24886911
Alignment:
| Q |
427 |
aattaatatctttaagacacttattagtataat |
459 |
Q |
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| T |
24886943 |
aattaatatctttaagacacttattagtataat |
24886911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 24877273 - 24877200
Alignment:
| Q |
79 |
acaaacaaatttgcagctatttgtctattttggtcaactcacttttcgaggagagacaataattaaaatcatata |
153 |
Q |
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| T |
24877273 |
acaaagaaatttgcagctatttatctactttggtccacccactttt-gggtagagacaataattgaaattatata |
24877200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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