View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353-INSERTION-7 (Length: 792)
Name: NF1353-INSERTION-7
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353-INSERTION-7 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 346 - 780
Target Start/End: Complemental strand, 44993232 - 44992799
Alignment:
| Q |
346 |
ctcagtttataaatcaatgatttgtaagattaaccacaatattgttaacttcctgaaaatatcttcaataaaacatcggaaaccgcagtatttcttgaat |
445 |
Q |
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| T |
44993232 |
ctcagtttataaatcaatgatttgtaagattaaccacaatattgttaacttcctgaaaatatcttcaataaaacatcggaaaccgcaatatttcttgaat |
44993133 |
T |
|
| Q |
446 |
gcattgtttctaattggcagaataaagtcatataagtttacttgtgattatcccacctgttctatatctattaaaaagcaaagtgaaaacagaagaagca |
545 |
Q |
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| T |
44993132 |
gcattgtttctaattggcagaataaagtcatataagtttacttgtgattatcccacctgttctatatctattaaaaagtaaagtgaaaacagaagaagca |
44993033 |
T |
|
| Q |
546 |
gaagatttccacattttattagctttgtatgctaatgtgtgtatcataatatatctgctgtagattctatggattcaacagcacatactggacagccaag |
645 |
Q |
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| T |
44993032 |
gaagatttccacattttattagctttgtatgctaatgtgtgtatcataatatatctgctgtagattctatggattcaacagcacatactggacagccaag |
44992933 |
T |
|
| Q |
646 |
tggggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgtcga |
745 |
Q |
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| T |
44992932 |
t-gggagtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgtcaa |
44992834 |
T |
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| Q |
746 |
atatatggcttttgtgcccggatttatcttaattg |
780 |
Q |
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| T |
44992833 |
atatatggcttttgtgcccagatttatcttaattg |
44992799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 414 - 763
Target Start/End: Complemental strand, 44981653 - 44981299
Alignment:
| Q |
414 |
taaaacatcggaaaccgcagtatttcttgaatgcattgtttctaattggcagaataaagtcatataagtttacttgtgattatcccacctgttctata-- |
511 |
Q |
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|||||||| ||||||| || |||||||| |||||||| ||||||||||||||| ||||||||| ||||| | |||||||||||||| |||||||||| |
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| T |
44981653 |
taaaacataggaaaccacaatatttcttaaatgcattttttctaattggcagagtaaagtcatgcaagttaatttgtgattatcccatctgttctatact |
44981554 |
T |
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| Q |
512 |
-tctattaaaaag-caaagtgaaaacagaagaagcaga---agatttccacattttattagctttgtatgctaatgtgtgtatcataatatatctgctgt |
606 |
Q |
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||||||||| || |||| |||||| | || || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
44981553 |
atctattaaatagtcaaactgaaaagaaaaaaaaaagttgcagatttccacattttattagccttgtatgctaatgtgtgtatcataatatatctt-tgt |
44981455 |
T |
|
| Q |
607 |
agattctatggattcaacagcacatactggacagccaagtggggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttat |
706 |
Q |
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||||||| |||||||| |||||| || ||||| |||| ||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
44981454 |
agattctctggattcagtagcacagaccggacaaccaaatggtgg-tgattggcaagaagaaatatatcaaaatgtattatgctactttctcatctttat |
44981356 |
T |
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| Q |
707 |
ttcttgggcaaattgggtttatcaactgaaaattgtcgaatatatggcttttgtgcc |
763 |
Q |
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| T |
44981355 |
ttattgggtaaattggatttattaatagaaaattgacaaacaaatgacttttgtgcc |
44981299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 423 - 762
Target Start/End: Complemental strand, 44965425 - 44965088
Alignment:
| Q |
423 |
ggaaaccgcagtatttcttgaatgcattgtttctaattggcagaataaagtcatataagtttacttgtgattatcccacctgttctatatctattaaaaa |
522 |
Q |
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||||||| || |||||| ||||| |||| |||| |||||| ||||| ||||||| ||| || || ||||||||||| ||||| |||||| ||||||| |
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| T |
44965425 |
ggaaaccacaatatttcatgaatacattttttcaaattggtagaatgaagtcatgtaaattagtttatgattatcccatttgttccatatctcttaaaaa |
44965326 |
T |
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| Q |
523 |
-gcaaagtgaaaacagaagaagcagaagatttccacattttattagctttgtatgctaatgtgtgta------tcataatatatctgctgtagattctat |
615 |
Q |
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| T |
44965325 |
cgcaaag-gaaaa---aaaaagcaga---tttccacatttt-ttagctatgtatgcttatgtgtgtacatagttaatgatatatctgttgtagattctat |
44965234 |
T |
|
| Q |
616 |
ggattcaacagcacatactggacagccaagtggggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggc |
715 |
Q |
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||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
44965233 |
ggattcaacagcacagactggacagacaagtggggg-tgattggcaagaagaagtgtatcaaaaagtaatatgctactttctcaactttatttcttgggt |
44965135 |
T |
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| Q |
716 |
aaattgggtttatcaactgaaaattgtcgaatatatggcttttgtgc |
762 |
Q |
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| T |
44965134 |
aaattgggttgaacaacagaaaattttcaaacaaatggcttttgtgc |
44965088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 44993379 - 44993265
Alignment:
| Q |
233 |
ttaaagaaaaagtgagactgttgtcttaagttaatctgttcctgattcttatccttcaaatttttagcctatcttaatgcttatgggaagttgtctgaat |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44993379 |
ttaaagaaaaagtgagactgttgtcttaagttaatctgttcctgattcttatccttcaaattttttgcctatcttaatgcttatgggaagttgtctgaat |
44993280 |
T |
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| Q |
333 |
gtatgtggtatccct |
347 |
Q |
| |
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| T |
44993279 |
gtatgtggtatccct |
44993265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 610 - 758
Target Start/End: Complemental strand, 44980320 - 44980173
Alignment:
| Q |
610 |
ttctatggattcaacagcacatactggacagccaagtggggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttc |
709 |
Q |
| |
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|||| |||||||||| ||| | |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
44980320 |
ttctctggattcaactgcaaagactggaaagccaagtggggg-tgattggcaagaagaagtatatcaaaaggtattatgctactttcttatctttatttc |
44980222 |
T |
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| Q |
710 |
ttgggcaaattgggtttatcaactgaaaattgtcgaatatatggctttt |
758 |
Q |
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||||| |||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
44980221 |
ttgggaaaattgggtttatcaactgaaaattgtcaaataaatggctttt |
44980173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 44993589 - 44993493
Alignment:
| Q |
8 |
gatcaataattctatgtgctgggatgcattccatgcacaatttcagcagaatgaatttccactcttgtgctttcaacaactcttaacaaacacttgc |
104 |
Q |
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| T |
44993589 |
gatcaataattctatgtgctgggatgcattccatgcacaatttcagcagaatgaatttccactcttgtgctttcaacaactcttaacaaacacttgc |
44993493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 44981844 - 44981795
Alignment:
| Q |
16 |
attctatgtgctgggatgcattccatgcacaatttcagcagaatgaatttcc |
67 |
Q |
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| T |
44981844 |
attctatgtgctgggatgcattccatg--caatctcagcataatgaatttcc |
44981795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 44981706 - 44981669
Alignment:
| Q |
67 |
cactcttgtgctttcaacaactcttaacaaacacttgc |
104 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |
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| T |
44981706 |
cactcttatgctttcaacaattcttaacaaacacttgc |
44981669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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