View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13530_high_1 (Length: 453)
Name: NF13530_high_1
Description: NF13530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13530_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 3002778 - 3003214
Alignment:
| Q |
1 |
ggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002778 |
ggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtggta |
3002877 |
T |
|
| Q |
101 |
gggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002878 |
gggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtttgc |
3002977 |
T |
|
| Q |
201 |
aagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgtgttttacttgttttttcaatgtgcaggggccagggagtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002978 |
aagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgttttttacttgttttttcaatgtgcaggggccagggagtat |
3003077 |
T |
|
| Q |
301 |
gacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttactgcattacgatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3003078 |
gacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttactgcattatgatat |
3003177 |
T |
|
| Q |
401 |
tttatctccgacatagtgtctctttgcggttattatt |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003178 |
tttatctccgacatagtgtctctttgcggttattatt |
3003214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University