View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13530_high_3 (Length: 341)

Name: NF13530_high_3
Description: NF13530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13530_high_3
NF13530_high_3
[»] scaffold0032 (1 HSPs)
scaffold0032 (17-323)||(42488-42794)
[»] chr6 (4 HSPs)
chr6 (219-279)||(3525166-3525226)
chr6 (211-267)||(28776629-28776685)
chr6 (211-267)||(28798333-28798389)
chr6 (220-264)||(33385586-33385630)
[»] chr2 (1 HSPs)
chr2 (210-267)||(32821863-32821920)
[»] chr5 (3 HSPs)
chr5 (208-252)||(32190960-32191004)
chr5 (218-252)||(13264072-13264106)
chr5 (218-258)||(35095753-35095793)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-265)||(27632-27679)
[»] chr3 (4 HSPs)
chr3 (213-264)||(24624267-24624318)
chr3 (213-264)||(26542594-26542645)
chr3 (208-265)||(37155057-37155114)
chr3 (208-265)||(37200412-37200469)
[»] chr4 (3 HSPs)
chr4 (211-265)||(23819145-23819199)
chr4 (223-255)||(1404482-1404514)
chr4 (208-256)||(37734063-37734111)
[»] scaffold0012 (1 HSPs)
scaffold0012 (221-265)||(38648-38692)
[»] chr8 (1 HSPs)
chr8 (213-265)||(30259170-30259222)
[»] chr7 (2 HSPs)
chr7 (223-267)||(753179-753223)
chr7 (213-265)||(22388454-22388506)


Alignment Details
Target: scaffold0032 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 42488 - 42794
Alignment:
Q  17 aatattgatccagaagaaagtattcaaaatacattggagcccggagatagaacggacgataggccatcatactgattaagcaaagggcatactgcgcaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42488 aatattgatccagaagaaagtattcaaaatacattggagcccggagatagaacggacgataggccatcatactgattaagcaaagggcatactgcgcaag 42587  T
Q  117 aggttcctgaaactttagtttataagctattttcgaaattctgtttttgtttggtttgagatatttgaatttgaatttatttagtgatacgaacatttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42588 aggttcctgaaactttagtttataagctattttcgaaattctgtttttgtttggtttgagatatttgaatttgaatttatttagtgatacgaacatttgt 42687  T
Q  217 aagactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagctaatgaaaccattatacataagtatttatatgatata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42688 aagactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagctaatgaaaccattatacataagtatttatatgatata 42787  T
Q  317 cgcttag 323  Q
    |||||||    
T  42788 cgcttag 42794  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 3525226 - 3525166
Alignment:
Q  219 gactgtttggaagagtttatggaaatagcttatgatatgtctataagctcaataggatagc 279  Q
    ||||||| |||||||||||||||||||| |||||| ||||| ||||||||  |||||||||    
T  3525226 gactgttcggaagagtttatggaaatagtttatgacatgtccataagctctctaggatagc 3525166  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 28776685 - 28776629
Alignment:
Q  211 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 267  Q
    |||||| ||||| ||||| |||||||| ||||| |||||||||  ||||||||||||    
T  28776685 atttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagct 28776629  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 28798389 - 28798333
Alignment:
Q  211 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 267  Q
    |||||| ||||| ||||| |||||||| ||||| |||||||||  ||||||||||||    
T  28798389 atttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagct 28798333  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 33385630 - 33385586
Alignment:
Q  220 actgtttggaagagtttatggaaatagcttatgatatgtctataa 264  Q
    |||||||||||||||||||||||| |||| |||| ||||| ||||    
T  33385630 actgtttggaagagtttatggaaacagctcatgacatgtccataa 33385586  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 32821920 - 32821863
Alignment:
Q  210 catttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataagct 267  Q
    |||||| |||||||||||||||||||||| |||| | ||||||| ||||| |||||||    
T  32821920 catttgcaagactgtttggaagagtttatagaaacaacttatgacatgtccataagct 32821863  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 32191004 - 32190960
Alignment:
Q  208 aacatttgtaagactgtttggaagagtttatggaaatagcttatg 252  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||    
T  32191004 aacacttgttagactgtttggaagagtttatggaaacagcttatg 32190960  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 13264072 - 13264106
Alignment:
Q  218 agactgtttggaagagtttatggaaatagcttatg 252  Q
    |||||||||||||||||||||||||| ||||||||    
T  13264072 agactgtttggaagagtttatggaaacagcttatg 13264106  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 35095753 - 35095793
Alignment:
Q  218 agactgtttggaagagtttatggaaatagcttatgatatgt 258  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  35095753 agactgtttggaagagcttatggaaatatcttatgacatgt 35095793  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 27679 - 27632
Alignment:
Q  218 agactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    ||||||||||| |||| ||||||||||||||||||| ||| |||||||    
T  27679 agactgtttgggagagcttatggaaatagcttatgacatggctataag 27632  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 24624318 - 24624267
Alignment:
Q  213 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataa 264  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||||    
T  24624318 ttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataa 24624267  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 26542645 - 26542594
Alignment:
Q  213 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataa 264  Q
    ||||||||||||||||||||| |||  |||| | ||||||||||||||||||    
T  26542645 ttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataa 26542594  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 37155114 - 37155057
Alignment:
Q  208 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||| | ||||| |||||    
T  37155114 aacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataag 37155057  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 37200469 - 37200412
Alignment:
Q  208 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||| | ||||| |||||    
T  37200469 aacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataag 37200412  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 23819199 - 23819145
Alignment:
Q  211 atttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    |||||| |||||||||||||||||||| | ||| ||||||||| ||||| |||||    
T  23819199 atttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataag 23819145  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 1404514 - 1404482
Alignment:
Q  223 gtttggaagagtttatggaaatagcttatgata 255  Q
    ||||||||||| |||||||||||||||||||||    
T  1404514 gtttggaagaggttatggaaatagcttatgata 1404482  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 37734111 - 37734063
Alignment:
Q  208 aacatttgtaagactgtttggaagagtttatggaaatagcttatgatat 256  Q
    ||||||||| | | ||||| | |||||||||||||||||||||||||||    
T  37734111 aacatttgtgaaattgttttggagagtttatggaaatagcttatgatat 37734063  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 38692 - 38648
Alignment:
Q  221 ctgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||    
T  38692 ctgtttggaggagtttatggaaataacttatgacatgtccataag 38648  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 30259222 - 30259170
Alignment:
Q  213 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    |||||| ||| ||||  |||| ||||||||| |||||||||||||||||||||    
T  30259222 ttgtaaaactatttgagagagcttatggaaacagcttatgatatgtctataag 30259170  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 753179 - 753223
Alignment:
Q  223 gtttggaagagtttatggaaatagcttatgatatgtctataagct 267  Q
    |||||| |||| ||||||||||||||||||| || ||||||||||    
T  753179 gtttggtagagcttatggaaatagcttatgacatatctataagct 753223  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 22388454 - 22388506
Alignment:
Q  213 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 265  Q
    |||| ||||||||||| | || |||||||||||||||| |||||||| |||||    
T  22388454 ttgtgagactgtttggtaaagcttatggaaatagcttaagatatgtccataag 22388506  T

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