View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13530_high_5 (Length: 282)

Name: NF13530_high_5
Description: NF13530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13530_high_5
NF13530_high_5
[»] chr3 (9 HSPs)
chr3 (19-185)||(22361131-22361297)
chr3 (19-185)||(22365518-22365684)
chr3 (29-135)||(23397192-23397298)
chr3 (221-257)||(22361333-22361369)
chr3 (221-257)||(36028807-36028843)
chr3 (221-255)||(22365720-22365754)
chr3 (152-185)||(36028879-36028912)
chr3 (221-257)||(5353344-5353380)
chr3 (221-257)||(28784835-28784871)
[»] chr8 (8 HSPs)
chr8 (19-185)||(30045233-30045403)
chr8 (19-185)||(30049636-30049806)
chr8 (21-185)||(7162594-7162758)
chr8 (221-257)||(30045440-30045476)
chr8 (221-257)||(30049843-30049879)
chr8 (221-254)||(7162795-7162828)
chr8 (221-264)||(44734477-44734520)
chr8 (221-257)||(44732164-44732200)
[»] chr4 (5 HSPs)
chr4 (19-185)||(3941491-3941661)
chr4 (19-185)||(3945890-3946060)
chr4 (221-257)||(3941693-3941729)
chr4 (221-257)||(3946092-3946128)
chr4 (221-257)||(22804932-22804968)
[»] chr5 (5 HSPs)
chr5 (19-185)||(200603-200769)
chr5 (19-185)||(196224-196390)
chr5 (221-257)||(196152-196188)
chr5 (221-257)||(200538-200574)
chr5 (221-257)||(32800639-32800675)
[»] chr2 (4 HSPs)
chr2 (26-185)||(1330688-1330847)
chr2 (221-257)||(1330883-1330919)
chr2 (221-257)||(45336580-45336616)
chr2 (221-257)||(45338892-45338928)
[»] chr7 (4 HSPs)
chr7 (19-185)||(39949376-39949540)
chr7 (19-185)||(39953768-39953932)
chr7 (221-259)||(39949302-39949340)
chr7 (221-257)||(39953696-39953732)
[»] scaffold1453 (2 HSPs)
scaffold1453 (78-185)||(1-108)
scaffold1453 (221-257)||(144-180)
[»] chr1 (1 HSPs)
chr1 (221-258)||(1550478-1550515)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 22361131 - 22361297
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22361131 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22361230  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361231 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 22361297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 22365518 - 22365684
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22365518 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22365617  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22365618 ggatgtatggatgatatgtatcaaatttgcagtatagtaaacattgttattgtccctttctcttcca 22365684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 23397298 - 23397192
Alignment:
Q  29 tctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatgg 128  Q
    |||| ||||||||| |||||||||||| |||||||||| | ||| ||| | |  ||||||||| |||||||| || ||| |||||||||| |||||||||    
T  23397298 tctgtacaagttaaataggtttatgtcgtatgacatcaacaaagtataagttatgtcattactaagtatttgactctaaatatgtaagaaagatgtatgg 23397199  T
Q  129 atggtat 135  Q
    |||||||    
T  23397198 atggtat 23397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 22361333 - 22361369
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  22361333 gagcttattgcttctgctgccattacaaaagctaaca 22361369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 36028843 - 36028807
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  36028843 gagcttattgcttctgctgccattacaaaagctaaca 36028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 22365720 - 22365754
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  22365720 gagcttattgcttctgctgccattacaaaagctaa 22365754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 36028912 - 36028879
Alignment:
Q  152 atagtaaacattgttattgtccctttctcttcca 185  Q
    ||||||||||||||||||||||||||||||||||    
T  36028912 atagtaaacattgttattgtccctttctcttcca 36028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 5353380 - 5353344
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  5353380 gagcttattgcttctgctgcctttgcaaaagctaaca 5353344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 28784835 - 28784871
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  28784835 gagcttattgcttctgctgcctttgcaaaagctaaca 28784871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 30045233 - 30045403
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 114  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045233 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30045332  T
Q  115 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045333 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30045403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 30049636 - 30049806
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 114  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049636 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30049735  T
Q  115 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049736 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30049806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 7162594 - 7162758
Alignment:
Q  21 taagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaagg 120  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7162594 taaggttatctgcacaagttaagcaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaagg 7162693  T
Q  121 atgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7162694 atgtatggatggtttgtattaaatttgcagcatagtaaacattgttattgtccctttctcttcca 7162758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 30045440 - 30045476
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  30045440 gagcttattgcttctgctgccattacaaaagctaaca 30045476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 30049843 - 30049879
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  30049843 gagcttattgcttctgctgccattacaaaagctaaca 30049879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 7162795 - 7162828
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagcta 254  Q
    ||||||||||||||||||||||||||||||||||    
T  7162795 gagcttattgcttctgctgccattacaaaagcta 7162828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 44734477 - 44734520
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaacactaacat 264  Q
    ||||||||||||||||||||| || ||||||||||||| |||||    
T  44734477 gagcttattgcttctgctgcctttgcaaaagctaacacaaacat 44734520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 44732164 - 44732200
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  44732164 gagcttattgcttctgctgcctttgcaaaagctaaca 44732200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 3941491 - 3941661
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 114  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941491 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3941590  T
Q  115 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941591 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3941661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 3945890 - 3946060
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 114  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945890 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3945989  T
Q  115 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945990 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3946060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 3941693 - 3941729
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  3941693 gagcttattgcttctgctgccattacaaaagctaaca 3941729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 3946092 - 3946128
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  3946092 gagcttattgcttctgctgccattacaaaagctaaca 3946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 22804932 - 22804968
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  22804932 gagcttattgcttctgctgcctttgcaaaagctaaca 22804968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 200769 - 200603
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  200769 agtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 200670  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200669 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 200603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 196390 - 196224
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  196390 agtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 196291  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  196290 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtctctttctcttcca 196224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 196188 - 196152
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  196188 gagcttattgcttctgctgccattacaaaagctaaca 196152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 200574 - 200538
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||| ||||||||||||||||||    
T  200574 gagcttattgcttctgctaccattacaaaagctaaca 200538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 32800639 - 32800675
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  32800639 gagcttattgcttctgctgcctttgcaaaagctaaca 32800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 1330688 - 1330847
Alignment:
Q  26 ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgta 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||||| ||||||||||||||||||||||||    
T  1330688 ttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcattagtaagtatttgactataagtatgtaagaaggatgta 1330787  T
Q  126 tggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1330788 aggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 1330847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 1330883 - 1330919
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||| ||||||||||||||||||||||||||    
T  1330883 gagcttattgtttctgctgccattacaaaagctaaca 1330919  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 45336580 - 45336616
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45336580 gagcttattgcttctgctgcctttgcaaaagctaaca 45336616  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 45338892 - 45338928
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45338892 gagcttattgcttctgctgcctttgcaaaagctaaca 45338928  T

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Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 39949540 - 39949376
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  39949540 agtaaggttatctgca--agttaagtaggtttatgtcatatgacatcagctaaacataggctgagttattactaagtatttggctataagtatgtaagaa 39949443  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39949442 ggatgtatggatgatatataaaaaatttgcagcatagtaaacattgttattgtccctttctcttcca 39949376  T

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Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 39953932 - 39953768
Alignment:
Q  19 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 118  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||    
T  39953932 agtaaggttatctgca--agttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattactaagtatttggctataagtatgtaagaa 39953835  T
Q  119 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 185  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39953834 ggatgtatggatgatatataaaaaatttgcagcatagtaaacattgttattgtccctttctcttcca 39953768  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 39949340 - 39949302
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaacact 259  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39949340 gagcttattgcttctgctgccattacaaaagctaacact 39949302  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 39953732 - 39953696
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  39953732 gagcttattgcttctgctgccattacaaaagctaaca 39953696  T

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Target: scaffold1453 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 1 - 108
Alignment:
Q  78 gctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 177  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 gctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 100  T
Q  178 ctcttcca 185  Q
    ||||||||    
T  101 ctcttcca 108  T

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Target: scaffold1453; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 144 - 180
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaaca 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  144 gagcttattgcttctgctgccattacaaaagctaaca 180  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 1550478 - 1550515
Alignment:
Q  221 gagcttattgcttctgctgccattacaaaagctaacac 258  Q
    ||||||||||||||||||||| || |||||||||||||    
T  1550478 gagcttattgcttctgctgcctttgcaaaagctaacac 1550515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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