View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13530_low_3 (Length: 421)
Name: NF13530_low_3
Description: NF13530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13530_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 46033477 - 46033089
Alignment:
| Q |
19 |
aaaggcacttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggatctcccaaaaatcacaggtagccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46033477 |
aaaggcacttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggatctcccaaaaatcacaggtagccc |
46033378 |
T |
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| Q |
119 |
caaatatctagtatgagatgtcacaacctttatttccatcttgttacagataatatttttctcaatatcaggcacatttcggctaaaggacacctcaaac |
218 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
46033377 |
caaatatctagtatgagatgtcacagcctttatttcgatcttgttacagataatatttttctcaatattaggcacatttcggctaaaggacacctcagac |
46033278 |
T |
|
| Q |
219 |
ttgtcataactaactaattggcccgaggctagttgatacatagtaagcacctgcatgattgtatttgcttcattttggttggctcttgcaaaaagaaggt |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46033277 |
ttgtcataactaactaattggcctgaggctagttgatacatagtaagcacctgcatgattgtatttgcttcattttgcttggctcttgcaaaaagaaggc |
46033178 |
T |
|
| Q |
319 |
tgtcatcggcaaacagaagatgtgtaattttgggggcatgtcttgccacttggataccgtgaatggactgattatttgactctctgtgc |
407 |
Q |
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| T |
46033177 |
tgtcatcggcaaacagaagatgtgtaattttgggggcatgtcttgccacttggataccgtgaatggactgattatttgactctctgtgc |
46033089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 30148459 - 30148511
Alignment:
| Q |
23 |
gcacttctctttccaccccttaactttcttccagacccgatcttgaacaaaag |
75 |
Q |
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| T |
30148459 |
gcactgctccttccaacccttcagtttcttccagacccgatctttaacaaaag |
30148511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 5807417 - 5807567
Alignment:
| Q |
27 |
ttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggatctcccaaaaatcacaggtagccccaaatatc |
126 |
Q |
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||||||||||| ||||| ||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||| || || || || |||| |
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| T |
5807417 |
ttctctttccaacccttgactttcttctgtagcctgtcttgaacaaaaacaaacacttcttttttggatcttccaaaaatcaccgggagtcctaagtatc |
5807516 |
T |
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| Q |
127 |
tagtatgagatgtcacaacctttatttccatcttgttacagataatatttt |
177 |
Q |
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| T |
5807517 |
tagaatgagatgtcacaacctttacttcaatcttgttacaaataatgtttt |
5807567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 28049796 - 28049724
Alignment:
| Q |
131 |
atgagatgtcacaacctttatttccatcttgttacagataatatttttctcaatatcaggcacatttcggcta |
203 |
Q |
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| T |
28049796 |
atgagatgtcacaacctttattcctatcttgttacagatcatggtcttctcaatatcaggcacattacggcta |
28049724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 11151722 - 11151895
Alignment:
| Q |
30 |
tctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggatctcccaaaaatcacaggtagccccaaatatctag |
129 |
Q |
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|||||||| ||||||| || ||||| |||||||| | ||||||| || | |||||||| ||||| |||||||||||||||| || | ||| | | |
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| T |
11151722 |
tctttccatcccttaatctttttccaaacccgatccttgacaaaagagaaaatctctttttttgatctaccaaaaatcacaggtaaaccaaggtatgttg |
11151821 |
T |
|
| Q |
130 |
tatgagatgtcacaacctttatttccatcttgttacagataatatttttctcaatatcaggcacatttcggcta |
203 |
Q |
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|||||||||||||||||||| || ||| | | |||||| |||||||||||||| |||| || |||||||||| |
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| T |
11151822 |
aatgagatgtcacaacctttacatcaatcctatcacagatcatatttttctcaatttcagacatatttcggcta |
11151895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 7197313 - 7197414
Alignment:
| Q |
156 |
atcttgttacagataatatttttctcaatatcaggcacatttcggctaaaggacacctcaaacttgtcataactaactaattggcccgaggctagttgat |
255 |
Q |
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||||| ||||||||||||| ||||||| | || ||||||||||||||||| ||||| ||| |||| ||| |||||| | ||| || ||||||| |||| |
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| T |
7197313 |
atcttattacagataatatctttctcattttctggcacatttcggctaaaagacacttcagacttatcaagactaaccagttgcccgaaggctagctgat |
7197412 |
T |
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| Q |
256 |
ac |
257 |
Q |
| |
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|| |
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| T |
7197413 |
ac |
7197414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 31437365 - 31437285
Alignment:
| Q |
23 |
gcacttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggatctcccaaa |
103 |
Q |
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|||||| ||||||||||| |||| ||||||||| |||| ||||||||||| | ||| | ||| |||||||||| ||||| |
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| T |
31437365 |
gcacttttctttccaccctttaagtttcttccacaccctttcttgaacaaaggaaaaaatatctcttttggatcttccaaa |
31437285 |
T |
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