View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13530_low_6 (Length: 290)
Name: NF13530_low_6
Description: NF13530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13530_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30049529 - 30049252
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049529 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
30049430 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30049429 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
30049330 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30049329 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
30049252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 7162482 - 7162205
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |
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|
| T |
7162482 |
tcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaat |
7162383 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7162382 |
tgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgctcttccatgtt |
7162283 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
7162282 |
gaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtatatgattca |
7162205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 196486 - 196763
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
196486 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
196585 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
196586 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
196685 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
196686 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
196763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 3945783 - 3945506
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945783 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
3945684 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3945683 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
3945584 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3945583 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
3945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39949647 - 39949924
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949647 |
tcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
39949746 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39949747 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaattttacattgatatgctttgttcttccatgtt |
39949846 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39949847 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
39949924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 22365411 - 22365134
Alignment:
| Q |
1 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
100 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365411 |
tcaacactcctccttaaaacttatctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
22365312 |
T |
|
| Q |
101 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365311 |
tgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
22365212 |
T |
|
| Q |
201 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacatgattca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22365211 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
22365134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
149 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
213 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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