View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13531_high_1 (Length: 598)
Name: NF13531_high_1
Description: NF13531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13531_high_1 |
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| [»] scaffold0014 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Complemental strand, 6623345 - 6622785
Alignment:
| Q |
20 |
aacaaaggacttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatgaacttctcgag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6623345 |
aacaaaggacttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggaggggaattcatgaacttctcgag |
6623246 |
T |
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| Q |
120 |
gagagtctagaattttggatgaaattcagtacttctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623245 |
gagagtctagaattttggatgaaattcagtacttctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttc |
6623146 |
T |
|
| Q |
220 |
aagaaaactggaaattatcaataggaatatgattttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagaca |
319 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623145 |
aagaaaactggaaattatcaatatgaatacgattttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagaca |
6623046 |
T |
|
| Q |
320 |
acagtattgaaattcaagtgctgaaaattatgatttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaac |
419 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623045 |
acagtattgatattcaagtgctgaaaattatgatttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaac |
6622946 |
T |
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| Q |
420 |
atttggagaagttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacg |
519 |
Q |
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| T |
6622945 |
atttggagaagttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacg |
6622846 |
T |
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| Q |
520 |
cacatgcacttaaaccaaattcattcttttaagttgccccacaactgctatatgaaattta |
580 |
Q |
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| T |
6622845 |
cacatgcacttaaaccaaattcattcttttaagttgccccacaactgctatatgaaattta |
6622785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 161 - 379
Target Start/End: Original strand, 90415 - 90628
Alignment:
| Q |
161 |
tgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttgaagaaaactggaaattatcaataggaatatgattttataaa |
260 |
Q |
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| T |
90415 |
tgagatacaaaaatatgtaaccactg-aaaagatttactaatttatgtatcaaaactt----aaaactggaaatcatccgaaggaatatgattttataaa |
90509 |
T |
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| Q |
261 |
ctcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgaaattcaagtgctgaaaattatgatttcaggt |
360 |
Q |
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| T |
90510 |
ctcgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacggcagtattgaaatccaagtgctgaaaacgatgatttcaggt |
90609 |
T |
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| Q |
361 |
tcagaagctttcaagcaac |
379 |
Q |
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||| ||||| ||||||||| |
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| T |
90610 |
tcacaagctatcaagcaac |
90628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 424 - 572
Target Start/End: Original strand, 90629 - 90776
Alignment:
| Q |
424 |
ggagaagttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaacatctctaacgcaca |
523 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
90629 |
ggagaagttgccacagtactacgctacttctgtgatgtttcacagtcctt-cttcttctattagtaaaaactggggcagtaagaacatctctaacgcacg |
90727 |
T |
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| Q |
524 |
tgcacttaaaccaaattcattcttttaagttgccccacaactgctatat |
572 |
Q |
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| T |
90728 |
tacactaaaaccaaattcatgcttttaagttgccctacaatagctatat |
90776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 90327 - 90417
Alignment:
| Q |
19 |
gaacaaaggacttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatga |
109 |
Q |
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| T |
90327 |
gaacaaaggacttaagtgaaggatgatgactcttcagagacaagagttgcagttctgctgttgaagagaaattccggatgggaattcatga |
90417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 28751910 - 28751782
Alignment:
| Q |
71 |
ttctgctgctgaagagaaattcaggatgggaattcatgaacttctcgaggagagtctagaattttggatgaaattcagtacttctttcactgagatacaa |
170 |
Q |
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|||||||| ||||||||| || ||||||| || | |||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
28751910 |
ttctgctgttgaagagaagtttcggatgggtatcgacgaacttctcgaggagaatctagaattctggatgaaattcagcacttctttcaccgagatacag |
28751811 |
T |
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| Q |
171 |
aaatatgtaaccactgcaaaagatttact |
199 |
Q |
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| T |
28751810 |
aaatacgaaacaactacaaaagatttact |
28751782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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