View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13531_high_11 (Length: 206)
Name: NF13531_high_11
Description: NF13531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13531_high_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 2022258 - 2022428
Alignment:
| Q |
36 |
aattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttt |
135 |
Q |
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| T |
2022258 |
aattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttt |
2022357 |
T |
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| Q |
136 |
tatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaat |
206 |
Q |
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| T |
2022358 |
tatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaat |
2022428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 2032973 - 2033010
Alignment:
| Q |
68 |
gtttataatagtaattttgatctttatagttcaccagc |
105 |
Q |
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| T |
2032973 |
gtttataatagtaattttgatatttatagctcaccagc |
2033010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 28736679 - 28736621
Alignment:
| Q |
65 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
123 |
Q |
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| T |
28736679 |
ttggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac |
28736621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 28743305 - 28743247
Alignment:
| Q |
65 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
123 |
Q |
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| T |
28743305 |
ttggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac |
28743247 |
T |
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