View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13531_low_11 (Length: 237)
Name: NF13531_low_11
Description: NF13531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13531_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40276489 - 40276386
Alignment:
| Q |
1 |
actactcaacttataaatattttatcctaacttcatataaacgataagcctctggtgggtaaccttcgctccgccaacgccacaagtggcttaggtttgg |
100 |
Q |
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| T |
40276489 |
actactcaacttataaacattttatcctaacttcatataaacgataagcctctggtgggtaaccttcgctccgccaacgccacaagtggcttagctttgg |
40276390 |
T |
|
| Q |
101 |
tggt |
104 |
Q |
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|||| |
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| T |
40276389 |
tggt |
40276386 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 11219752 - 11219717
Alignment:
| Q |
183 |
gtgtaattgattaggaatctaatgtaaatgcttggt |
218 |
Q |
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| T |
11219752 |
gtgtaattgattaggaatctaatgtaaatacttggt |
11219717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 31274438 - 31274486
Alignment:
| Q |
79 |
gccacaagtggcttaggtttggtggtacctccacgagattcatagaggt |
127 |
Q |
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| T |
31274438 |
gccacaagtggcttagcttttgtggttcctccatgagattcagagaggt |
31274486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 32345919 - 32345967
Alignment:
| Q |
79 |
gccacaagtggcttaggtttggtggtacctccacgagattcatagaggt |
127 |
Q |
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| T |
32345919 |
gccacaagtggcttagcttttgtggttcctccatgagattcagagaggt |
32345967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 32362587 - 32362635
Alignment:
| Q |
79 |
gccacaagtggcttaggtttggtggtacctccacgagattcatagaggt |
127 |
Q |
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|||||||||||||||| ||| ||||| |||||| |||||||| |||||| |
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| T |
32362587 |
gccacaagtggcttagcttttgtggttcctccatgagattcagagaggt |
32362635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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