View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13531_low_3 (Length: 414)
Name: NF13531_low_3
Description: NF13531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13531_low_3 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 35880818 - 35880415
Alignment:
| Q |
1 |
tatgaatggtttttgttcttctctttctcatgtaagatctttcagatagannnnnnngaaaacgtggtcattaaatcatgacataggaccaaccttaaca |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
35880818 |
tatgaatggtttttgttcttttctttctcatgtaagttctttcagatagattttt--gaaaacttggtcattaaatcatgacataggaccaaccttgaca |
35880721 |
T |
|
| Q |
101 |
tgctttggataaagtgaaaaatataaagatgcattgttcatgattttcctccaaaagtaatttcaaaaactctatttttaatgaagggtttttt--aata |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||| |
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| T |
35880720 |
tgctttggataaagtgaaaaatataaagatgcattgttcatgatttttctccaaaagtaatttcaaaaactctgtttttaatgaagttttttttttaata |
35880621 |
T |
|
| Q |
199 |
agataaatcatgtaaaaattgattttcttcaaacaatgattttaagcatgatttttcaaattttctcatgatcattagttgtagaaatgttattaaaatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35880620 |
agataaatcatgtaaaaattgattttcttcaaacaatgattttaagcttgatttttcaaattttctcatgatcattagttgtagaaatgttattaaaatt |
35880521 |
T |
|
| Q |
299 |
caagcaaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgcaacaatgttgctt |
398 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35880520 |
caagaaaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgtaacaatgttgctt |
35880421 |
T |
|
| Q |
399 |
cccatt |
404 |
Q |
| |
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|||||| |
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| T |
35880420 |
cccatt |
35880415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 404
Target Start/End: Complemental strand, 5764 - 5374
Alignment:
| Q |
4 |
gaatggtttttgttcttctctttctcatgtaagatctttcagatagannnnnnngaaaacgtggtcattaaatcatgacataggaccaaccttaacatgc |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||| || ||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
5764 |
gaatggtttttgttcttctctttctcatgtaagttcttttagatagattttt--gagaacttggtcattcaatcatgacataggaccaaccttgtcatgc |
5667 |
T |
|
| Q |
104 |
tttggataaagtgaaaaatataaagatgcattgttcatgattttcctccaaaagtaatttcaaaaactctatttttaatgaagggttttttaataagata |
203 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
5666 |
tttggataaagtgaaaaatata--------ttgttcatgacttttctccaaaagtaaattcaaaaactatatttttaatgaagggtttttaaataagata |
5575 |
T |
|
| Q |
204 |
aatcatgtaaaaattgattttcttcaaacaatgattttaagcatgatttttcaaattttctcatgatcattagttgtagaaatgttattaaaattcaagc |
303 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5574 |
aatcatgtaaaaaatgattttcttcaaacaatgattttaagcatgatttttaaaattttctcatgatcattagttgttgaattgttattaaaattcaagc |
5475 |
T |
|
| Q |
304 |
aaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgcaacaatgttgcttcccat |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5474 |
aaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgaaacaatgttgcttcccat |
5375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 404
Target Start/End: Complemental strand, 20033834 - 20033444
Alignment:
| Q |
4 |
gaatggtttttgttcttctctttctcatgtaagatctttcagatagannnnnnngaaaacgtggtcattaaatcatgacataggaccaaccttaacatgc |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||| || ||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
20033834 |
gaatggtttttgttcttctctttctcatgtaagttcttttagatagattttt--gagaacttggtcattcaatcatgacataggaccaaccttgtcatgc |
20033737 |
T |
|
| Q |
104 |
tttggataaagtgaaaaatataaagatgcattgttcatgattttcctccaaaagtaatttcaaaaactctatttttaatgaagggttttttaataagata |
203 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
20033736 |
tttggataaagtgaaaaatata--------ttgttcatgacttttctccaaaagtaaattcaaaaactatatttttaatgaagggtttttaaataagata |
20033645 |
T |
|
| Q |
204 |
aatcatgtaaaaattgattttcttcaaacaatgattttaagcatgatttttcaaattttctcatgatcattagttgtagaaatgttattaaaattcaagc |
303 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
20033644 |
aatcatgtaaaaaatgattttcttcaaacaatgattttaagcatgatttttaaaattttctcatgatcattagttgttgaattgttattaaaattcaagc |
20033545 |
T |
|
| Q |
304 |
aaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgcaacaatgttgcttcccat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20033544 |
aaatttcgaataacaatcacatattaaaaatcaataagatatgtgattttgacatgattattcatttttagatgagatctgaaacaatgttgcttcccat |
20033445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 27781827 - 27781793
Alignment:
| Q |
125 |
aaagatgcattgttcatgattttcctccaaaagta |
159 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
27781827 |
aaagatgcattgttcatgatttttctccaaaagta |
27781793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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