View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13531_low_7 (Length: 264)
Name: NF13531_low_7
Description: NF13531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13531_low_7 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 40276487 - 40276738
Alignment:
| Q |
1 |
agttctctttatcatacaatatattcgaaaaggttaaaaacattgttgattaatatgttctctgagaaattctttattggatggtgttaaagtagtatta |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40276487 |
agttctctttataatacaatatattcgaaaaggttaaaaacattgttgattaatatgttctctgagaaattctttattggatggtgttaaagtagtatta |
40276586 |
T |
|
| Q |
101 |
cttacaacttttaagggtagtagaaagatttcaactcttccggagcacaaaacactcgcgccctgcagccttagcaaaaatactattgtgtgtgttaact |
200 |
Q |
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|||||||||||||||| || ||||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||||| | ||||||||||||| |
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| T |
40276587 |
cttacaacttttaaggataatagaaagatttcagctcttcctcagtacaaaacactcgcgctctgcagccttgccaaaaataccctcgtgtgtgttaact |
40276686 |
T |
|
| Q |
201 |
aacgccgcgttagttaactcactctagttcaatttctttgttgtttcatctc |
252 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
40276687 |
aataccgcgttagttaactcacgctagttcaatttcttttttgtttcttctc |
40276738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 16935487 - 16935515
Alignment:
| Q |
144 |
agcacaaaacactcgcgccctgcagcctt |
172 |
Q |
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| T |
16935487 |
agcacaaaacactcgcgccctgcagcctt |
16935515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 43532534 - 43532426
Alignment:
| Q |
144 |
agcacaaaacactcgcgccctgcagccttagcaaaaatactattgtgtgtgttaactaacgccgcgttagttaactcactctagttcaatttctttgttg |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43532534 |
agcacaaaacactcgcgccctgcagccttgtcaaaaataccctcgcgtgagttaactaacgccgcgttagttaactcacgctagttcaatttctttgttg |
43532435 |
T |
|
| Q |
244 |
tttcatctc |
252 |
Q |
| |
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|||| |||| |
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| T |
43532434 |
tttcttctc |
43532426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 32804484 - 32804586
Alignment:
| Q |
146 |
cacaaaacactcgcgccctgcagccttagcaaaaatactattgtgtgtgttaactaacgccg-cgttagttaactcactctagttcaatttctttgttgt |
244 |
Q |
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||||||||||||||||||||||||||| |||||||||| | || ||||||||||| || ||||||||||||||| |||||||||||||||| |||| |
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| T |
32804484 |
cacaaaacactcgcgccctgcagccttgccaaaaatactctcacgtaagttaactaacgtcggcgttagttaactcacgctagttcaatttctttattgt |
32804583 |
T |
|
| Q |
245 |
ttc |
247 |
Q |
| |
|
||| |
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|
| T |
32804584 |
ttc |
32804586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 7081571 - 7081543
Alignment:
| Q |
194 |
gttaactaacgccgcgttagttaactcac |
222 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
7081571 |
gttaactaacgccgcgttagttaactcac |
7081543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 188470 - 188442
Alignment:
| Q |
144 |
agcacaaaacactcgcgccctgcagcctt |
172 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
188470 |
agcacaaaacactcgcgccctgcagcctt |
188442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 20188833 - 20188805
Alignment:
| Q |
194 |
gttaactaacgccgcgttagttaactcac |
222 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20188833 |
gttaactaacgccgcgttagttaactcac |
20188805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 21615690 - 21615662
Alignment:
| Q |
194 |
gttaactaacgccgcgttagttaactcac |
222 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21615690 |
gttaactaacgccgcgttagttaactcac |
21615662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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