View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13532_high_1 (Length: 577)
Name: NF13532_high_1
Description: NF13532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13532_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Complemental strand, 46995895 - 46995349
Alignment:
| Q |
15 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995895 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg |
46995796 |
T |
|
| Q |
115 |
ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995795 |
ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttc |
46995696 |
T |
|
| Q |
215 |
acaccaacctattcacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995695 |
acaccaacctattcacaatagatggtttcctgaaggctatggtccaattatcaaccttcctttcaaacatcacgacgagtttattcatagatatgaagca |
46995596 |
T |
|
| Q |
315 |
cctattttgagagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995595 |
cctattttgagagagagaatcttccatttttcagcagagtttatagcaaaactcaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgt |
46995496 |
T |
|
| Q |
415 |
ttcaatctttatctgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995495 |
ttcaatctttatctgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaac |
46995396 |
T |
|
| Q |
515 |
gagaatggaaccgtctcttcctaaggaatattttgggaattcagttt |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46995395 |
gagaatggaaccgtctcttcctaaggaatattttgggaattcagttt |
46995349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 556
Target Start/End: Complemental strand, 46998143 - 46997614
Alignment:
| Q |
15 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| || |
|
|
| T |
46998143 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt |
46998044 |
T |
|
| Q |
115 |
ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttc |
214 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
46998043 |
gtattggtgatggaactggttattggaatttctttaactcattttctgagatatttcaaaa------------tgatgttcatgttcctgttccgatttc |
46997956 |
T |
|
| Q |
215 |
acaccaacctattcacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagca |
314 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
46997955 |
acataaacctattcacaatagatggtttccagaaggttatggtccaatcatcagccttcctttcaaacatcatgacgagtttattcatagatatgaaaca |
46997856 |
T |
|
| Q |
315 |
cctattttgagagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgt |
414 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| || |||||||||| || |||| ||||||||||| | |
|
|
| T |
46997855 |
cctattttgagagagagaatatttcatttttcagcagagtctattgcgaaacttaaagcaaaagctaacaaagagtctgatacaaacaaaatctcttctt |
46997756 |
T |
|
| Q |
415 |
ttcaatctttatctgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaac |
514 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||| |||| |||| |||| || | ||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
46997755 |
ttcaatccttatcagcactagtttggagatctctaacgcgtgcacgtcagttacaacaaggtcaacgaacaacttgcaaattggccgtaaacaaccgaac |
46997656 |
T |
|
| Q |
515 |
gagaatggaaccgtctcttcctaaggaatattttgggaattc |
556 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46997655 |
gagaatggaaccacctcttcctaaggaatattttgggaattc |
46997614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 46981062 - 46980539
Alignment:
| Q |
20 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgtt |
119 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||| || | || |
|
|
| T |
46981062 |
agcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctt |
46980963 |
T |
|
| Q |
120 |
ggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacacc |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||| ||||||||||||||||||| |||||||| | | || ||| |||||||| | |
|
|
| T |
46980962 |
tgtgatggaacagcttattggaatttcttcaacacattttctgagatatttcaaaa------------tgatgttcctgctgct--tcccatttcacatc |
46980877 |
T |
|
| Q |
220 |
aacctattcacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctat |
319 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| |||||||||||||||||||| || |||||||||||| | |||||| |||| ||||||||| |||| || |
|
|
| T |
46980876 |
aacctatccacaagagatggtttccacaaggttatggtccaattatcaaccttccattcaaacatcaccatgagtttgttcacagatatgaaacacccat |
46980777 |
T |
|
| Q |
320 |
tttgagagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaa |
419 |
Q |
| |
|
||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| | |||| ||||| |||||||||||| |
|
|
| T |
46980776 |
tttaagagagagaatcttccatttttcagtggaatctatagcaaaacttaaagcaaaggcaaatgcagagtctaatacaaacaaaatttcttcgtttcaa |
46980677 |
T |
|
| Q |
420 |
tctttatctgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaa |
519 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| || |||| |||||| || | ||||||||| ||||||||| |||||| |||||||||||| |||| |
|
|
| T |
46980676 |
tctttatcagcattagtttggagatctataactcatgcacgtcaactacaacacggtcagagaacaacttgcaaaatggctacaaacaaccgaacaagaa |
46980577 |
T |
|
| Q |
520 |
tggaaccgtctcttcctaaggaatattttgggaattca |
557 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46980576 |
tggaaccacctcttcctaaggaatattttgggaattca |
46980539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 46975075 - 46974550
Alignment:
| Q |
20 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgtt |
119 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||| || | |||||||| ||||||||||| || |||||||| ||||||||||||||||| || | | |
|
|
| T |
46975075 |
agcagtcagccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtata |
46974976 |
T |
|
| Q |
120 |
ggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttcacacc |
219 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||| |||||||| | |
|
|
| T |
46974975 |
ggtgatgggactggttattggaatttctttaactcattttctgagatatttcaaaa------------tgatattcatgttcttgttccgatttcacatc |
46974888 |
T |
|
| Q |
220 |
aacctattcacaatagatggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctat |
319 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||| ||||||||||| || |||||||||||||| |||||| |||| ||||||||| || | || |
|
|
| T |
46974887 |
aacctatccacaatagatggtttccacaaggttatggtccgattatcaaccttccattcaaacatcacgaggagtttgttcacagatatgaaacatccat |
46974788 |
T |
|
| Q |
320 |
tttgagagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaa |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||| | |||| ||||| |||||||||||| |
|
|
| T |
46974787 |
tttaagagagagaatcttccatttttcagctgagtctataatgaaactgaaagcaaaggcaaatgaagagtctaatacaagaaaaatttcttcgtttcaa |
46974688 |
T |
|
| Q |
420 |
tctttatctgcactagtttggagatctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaa |
519 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |||| |||||| || | ||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46974687 |
tctttatcagcattagtttggagatctataactcgtgcacgtcaactacaacacggtcagagaacaacttgcaaactggctacaaacaaccgaacgagaa |
46974588 |
T |
|
| Q |
520 |
tggaaccgtctcttcctaaggaatattttgggaattca |
557 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46974587 |
tggaaccacctcttccgaaggaatattttgggaattca |
46974550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 246 - 556
Target Start/End: Complemental strand, 47001588 - 47001277
Alignment:
| Q |
246 |
gaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagagagagaatcttccattttt |
345 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| || |||||||||| |
|
|
| T |
47001588 |
gaaggttatggtccaactatcaaccttcctttcaaacatcacgacgagtttattcacagatatcaagcacctactttgagagagaggatattccattttt |
47001489 |
T |
|
| Q |
346 |
cagcagagtctatagcaaaacttaaa-gcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatctgcactagtttggagat |
444 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| || |||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47001488 |
cagcagagtctatagcgaaacttaaaggcaaaagctaacaaagagtttgatacaaacaaaatctcttcgtttcaatctttatcagcactagtttggagat |
47001389 |
T |
|
| Q |
445 |
ctataactcgtgtgcgtcgactacaccatgatcagagaacgacttgcaaattggctataaacaaccgaacgagaatggaaccgtctcttcctaaggaata |
544 |
Q |
| |
|
|||||||||||| ||| || ||| | ||| ||||| ||||| || ||| || ||||||||||||| ||||| |||||| ||||||| || ||||| |
|
|
| T |
47001388 |
ctataactcgtgcatgtcaacaacaatgcggtcaaagaacaacttgtaagttgtctttaaacaaccgaactagaatagaaccgcctcttccaaatgaata |
47001289 |
T |
|
| Q |
545 |
ttttgggaattc |
556 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47001288 |
ttttgggaattc |
47001277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 47001835 - 47001603
Alignment:
| Q |
15 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg |
114 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| || |
|
|
| T |
47001835 |
cacagagcagttaaccatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcatt |
47001736 |
T |
|
| Q |
115 |
ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttc |
214 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
47001735 |
gtattggtgatggaacagcttattggaatttcttcaacacattttcggagatatttcaaaa------------tgatgttcatgttcctgttccgatttc |
47001648 |
T |
|
| Q |
215 |
acaccaacctattcacaatagatggtttcctgaaggctatggtcc |
259 |
Q |
| |
|
||| ||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
47001647 |
acataaacctattcacaaaagatggtttccagaaggttatggtcc |
47001603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 46951633 - 46951480
Alignment:
| Q |
20 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgtt |
119 |
Q |
| |
|
|||| ||||||| || || ||||||||| | ||||| ||||| ||||||||||| || |||| |||||||||||||||||||| ||||| ||| | || |
|
|
| T |
46951633 |
agcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatatt |
46951534 |
T |
|
| Q |
120 |
ggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaa |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
46951533 |
ggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
46951480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 46955972 - 46955837
Alignment:
| Q |
18 |
agagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctg |
117 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| | ||| | |||||||||||||| |||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
46955972 |
agagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgta |
46955873 |
T |
|
| Q |
118 |
ttggtgatggaactgcttattggaatttctttaata |
153 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
46955872 |
ttggtgatgggacttctttttggaatttcttcaata |
46955837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 46951431 - 46951212
Alignment:
| Q |
237 |
tggtttcctgaaggctatggtccaattatcaacctccctttcaaacatcacgacgagtttattcatagatatgaagcacctattttgagagagagaatct |
336 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||| || || ||||||||||| |||||| |||| ||| |||||| |||| | ||||||||||| ||| |
|
|
| T |
46951431 |
tggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattataactaggtatgaaccacccaagctgagagagagattct |
46951332 |
T |
|
| Q |
337 |
tccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctttatctgcactagt |
436 |
Q |
| |
|
|||||||| ||||||||||||| ||||| | ||||| ||||| || | |||| | |||| ||||||||||| || ||||||||||| |||| || |
|
|
| T |
46951331 |
tccattttacagcagagtctattgcaaagttgaaagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctttatcagcacatgt |
46951232 |
T |
|
| Q |
437 |
ttggagatctataactcgtg |
456 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
46951231 |
ttggagaggtataactcgtg |
46951212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 46958826 - 46958673
Alignment:
| Q |
20 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgtt |
119 |
Q |
| |
|
|||| ||||||| || || ||||||||| | ||||| || ||||||||||| || || | || ||||||||||||||||||||| |||| || | || |
|
|
| T |
46958826 |
agcaatcaaccacgacggtcacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtatt |
46958727 |
T |
|
| Q |
120 |
ggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaa |
173 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||| | ||||||||||||||| |
|
|
| T |
46958726 |
ggtgatggtacctctttctggaatttttttaatatatggtctgagatatttcaa |
46958673 |
T |
|
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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 444
Target Start/End: Complemental strand, 46958525 - 46958405
Alignment:
| Q |
324 |
agagagagaatcttccatttttcagcagagtctatagcaaaacttaaagcaaaggcaaacaaagagtgcgagacaacgaaaatctcttcgtttcaatctt |
423 |
Q |
| |
|
||||| ||| ||||||||||| || | |||||||| | |||||| ||||||||||| || || |||| | ||||| ||||| |||||||| || ||| |
|
|
| T |
46958525 |
agagatagattcttccattttacaccggagtctattgtaaaactgaaagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctt |
46958426 |
T |
|
| Q |
424 |
tatctgcactagtttggagat |
444 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
46958425 |
tatcagcacatgtttggagat |
46958405 |
T |
|
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