View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13532_high_3 (Length: 224)
Name: NF13532_high_3
Description: NF13532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13532_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 4564577 - 4564762
Alignment:
| Q |
38 |
ttccttacaaaaaagtttaaactgtttgcagaagaattttataaaaagtgaaaagggcannnnnnnatcgggacaaaaacatagttataactatatagct |
137 |
Q |
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| T |
4564577 |
ttccttacaaaaaagtttaaactgtttgcagaagaattttataaaaagtgaaaaaggtatttttttatcaggacaaaaacatagttataactatatagct |
4564676 |
T |
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| Q |
138 |
tgtggaaacattctatagctctact-----agtagtgaaaaggctacccatacaaatgtttaattcaagagaaacaaaaagaattc |
218 |
Q |
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| T |
4564677 |
tgtggaaacattctatagctctactagtagagtagtgaaaaggctacccatacaaatgtttaattcaagagaaacaaaaagaattc |
4564762 |
T |
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