View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13532_low_2 (Length: 509)
Name: NF13532_low_2
Description: NF13532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13532_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 116 - 492
Target Start/End: Original strand, 2568972 - 2569347
Alignment:
| Q |
116 |
ctattcgcatacgcacattcctgattgtagcttattactcctnnnnnnntgaacagattcaaagaaaatcgagcaacagtcgagtgaatcacggcctgtt |
215 |
Q |
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| T |
2568972 |
ctattcacatacgcacattcctgattgtagcttattactcctaaaaaattgaacagattcaaagaaaatcgagcaacagtcgagtgaatcacggcctgtt |
2569071 |
T |
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| Q |
216 |
gaccgaattatcatatgtttttctctccaattctgtatctacaaggtctcttatgagacctaatgcagcaaaagcctttgttaggggtaataaaaactat |
315 |
Q |
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| T |
2569072 |
gaccgaattatcatatgtttttctctccaattctgtatctacaaggtctcttatgagacctaatgcagcaaaagcctttgttaggggtaataaaaactat |
2569171 |
T |
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| Q |
316 |
aaacattgnnnnnnnnncttatttattctaccaataatttttgtttctgagttggaaatttctcacatgtagtgtggaaggtgatggaaatgtgctatca |
415 |
Q |
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| T |
2569172 |
aaacattg-ttttttttcttatttattctaccaataatttttgtttctgagttggaaatttctcacatgtagtgtggaaggtgatggaaatgtgctatca |
2569270 |
T |
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| Q |
416 |
gatattgcttcaggaaaagcgtgtcacacagagggaactcttctacaagctgctgtgtgattcacaacatctgtttc |
492 |
Q |
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| T |
2569271 |
gatattgcttcaggaaaagcgtgtcacacagagggaactcttctacaagctgctgtgtcattcacaacatctgtttc |
2569347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 2568409 - 2568520
Alignment:
| Q |
133 |
ttcctgattgtagcttattactcctnnnnnnntgaacagattcaaagaaaatcgagcaacagtcgagtgaatcacggcctgttgaccgaattatcatatg |
232 |
Q |
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| T |
2568409 |
ttcctgattgtggcttattactcttgaaaaactgaacagattcatggaaaattgagcagcagtcgagtgaaccatggcttgttgaccagattatcatatg |
2568508 |
T |
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| Q |
233 |
tttttctctcca |
244 |
Q |
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|||||||||||| |
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| T |
2568509 |
tttttctctcca |
2568520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2568857 - 2568920
Alignment:
| Q |
1 |
tttgctaattccccattttagactgaggttgagaagctttaatcaagagtttgaaatttgcaag |
64 |
Q |
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||||||||||| |||||||||||||||||| | ||| | ||||||||||||||||||||||||| |
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| T |
2568857 |
tttgctaattcaccattttagactgaggtttataagttctaatcaagagtttgaaatttgcaag |
2568920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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