View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13533_high_3 (Length: 351)
Name: NF13533_high_3
Description: NF13533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13533_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 8756586 - 8756244
Alignment:
| Q |
9 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
108 |
Q |
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| T |
8756586 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
8756487 |
T |
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| Q |
109 |
gacaaggaaaaagatgcaggaatcgtcgagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcataca |
208 |
Q |
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| T |
8756486 |
gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcgtaca |
8756387 |
T |
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| Q |
209 |
ttcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaa |
308 |
Q |
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| T |
8756386 |
ttcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttgttcttagcttcttcactctatgttaa |
8756287 |
T |
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| Q |
309 |
ggttgaaccgaaaggcaatgtgattagtgagtgtgctcgagtc |
351 |
Q |
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| T |
8756286 |
ggttgaaccgaaaggcaatgtgattagtgagtgtgctcgagtc |
8756244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 8749032 - 8748694
Alignment:
| Q |
12 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
111 |
Q |
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| T |
8749032 |
atcacaacttgctttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagac |
8748933 |
T |
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| Q |
112 |
aaggaaaaagatgcaggaatcgtcgagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
211 |
Q |
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| T |
8748932 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaacagctgcagttttaattggaacgaccattttggcatatattc |
8748833 |
T |
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| Q |
212 |
aagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaaggt |
311 |
Q |
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| T |
8748832 |
aagaaaattttggttggattgttggatttggtttacctgttgtgttcatgttcatatctatggtatctttctttctagcttcttcactctatgtcaaggt |
8748733 |
T |
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| Q |
312 |
tgaaccgaaaggcaatgtgattagtgagtgtgctcgagt |
350 |
Q |
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| T |
8748732 |
ggaaccaaaaggcaacgtgattagtgagtgtgctcgagt |
8748694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 8766602 - 8766264
Alignment:
| Q |
12 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
111 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||| || |
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| T |
8766602 |
atcacagcttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaac |
8766503 |
T |
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| Q |
112 |
aaggaaaaagatgcaggaatcgtcgagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
211 |
Q |
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| T |
8766502 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttaacagcagctgcagtcctaactggaatgaccgttttggcatatattc |
8766403 |
T |
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| Q |
212 |
aagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaaggt |
311 |
Q |
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| T |
8766402 |
aagaaatttttggttggatggttggatttggtgtacctgttgtgttcatgttcatatctatggtgtctttctttttaggttcttcactctatgttaaggt |
8766303 |
T |
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| Q |
312 |
tgaaccgaaaggcaatgtgattagtgagtgtgctcgagt |
350 |
Q |
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| T |
8766302 |
ggaaccaaaaggcaatgtgattagtgagtttgctcgagt |
8766264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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