View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13533_low_1 (Length: 569)

Name: NF13533_low_1
Description: NF13533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13533_low_1
NF13533_low_1
[»] chr2 (5 HSPs)
chr2 (7-555)||(8146414-8146962)
chr2 (280-488)||(30545272-30545469)
chr2 (322-488)||(44154333-44154488)
chr2 (90-187)||(4058074-4058168)
chr2 (323-379)||(17947871-17947927)
[»] chr4 (7 HSPs)
chr4 (322-527)||(33464363-33464562)
chr4 (424-555)||(48570251-48570369)
chr4 (108-167)||(56418101-56418160)
chr4 (7-76)||(42601210-42601279)
chr4 (266-313)||(48569406-48569453)
chr4 (323-379)||(32894635-32894691)
chr4 (323-379)||(49347148-49347204)
[»] chr5 (1 HSPs)
chr5 (322-527)||(6006790-6006989)
[»] chr7 (2 HSPs)
chr7 (90-175)||(26245446-26245528)
chr7 (264-313)||(9096-9145)
[»] chr1 (2 HSPs)
chr1 (266-380)||(49420084-49420198)
chr1 (323-445)||(51051174-51051296)
[»] chr6 (2 HSPs)
chr6 (326-396)||(29647386-29647457)
chr6 (278-445)||(23593127-23593294)
[»] chr8 (3 HSPs)
chr8 (329-380)||(35840464-35840515)
chr8 (119-163)||(42914997-42915041)
chr8 (441-480)||(35840390-35840429)
[»] chr3 (1 HSPs)
chr3 (527-555)||(48646073-48646101)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Complemental strand, 8146962 - 8146414
Alignment:
Q  7 gagagatgaaatgaagcttgtgggcatcaaagatatgagatgtggaatacagttttagcttctttaaagttttaagattgtactagttcattaatttata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8146962 gagatatgaaatgaagcttgtgggcatcaaagatatgagatgtggaatacagttttagcttctttaaagttttaagattgtactagttcattaatttata 8146863  T
Q  107 attgaagaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacataaattctagatctggnnnnnnnnnngtgtgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          ||||||    
T  8146862 attgaagaagagtaatcaaataatttaagataatatgatttatgctctcctccgatagttctgcaacataaattctagatctggaaaaaaaaa-gtgtgt 8146764  T
Q  207 attcatggagttcaacagaaaagaggggtaattgcaggaa-gtatatatgttgaagataaggtgaggttcaacatgggaaagggaagttgtttttcatga 305  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  8146763 attcatggagttcaacagaaaagaggggtaattgcaggaaagtatatatgttgaagataaggtgaagtttaacatgggaaagggaagttgttttccatga 8146664  T
Q  306 tgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttcctctctcttctccatagtggctcac 405  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  8146663 tgggaaagttttttttaaccattagattaaagaggtgcatacattttatgatggtttgtccacaccatatatttcccctctcttctccatagtggctcac 8146564  T
Q  406 aatttgtctcggatctaattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgtt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8146563 aatttgtctcggatctaattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgtt 8146464  T
Q  506 ctttaaagttgcttaactcactttgatcaacacgtttagagctaagacct 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8146463 ctttaaagttgcttaactcactttgatcaacacgtttagagctaagacct 8146414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 280 - 488
Target Start/End: Complemental strand, 30545469 - 30545272
Alignment:
Q  280 tgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 379  Q
    |||||||||||||||||||  |||||||||||||        ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  30545469 tgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T
Q  380 cctctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaaccc 479  Q
    || ||||||||||||||||||||||            |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30545369 cccctctcttctccatagtggctca-----------agatccagttttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaaccc 30545281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 322 - 488
Target Start/End: Original strand, 44154333 - 44154488
Alignment:
Q  322 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttcctctctcttctccatagtggctcacaatttgtctcggatct 421  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||            ||||     
T  44154333 aaccattaaattaaagaggtgcacacattttatgatggtttgtccacaccatatatttcccctctcttctccatagtggctca-----------agatcc 44154421  T
Q  422 aattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattca 488  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44154422 agttttctcactcttgttgtgcgaccagatctcaaaatccattaattttttaaaacccattgattca 44154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 4058168 - 4058074
Alignment:
Q  90 tagttcattaatttataattgaagaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacataaattctagatc 187  Q
    ||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  4058168 tagttcatttatttataattgaaga---gtaatcaaataatttaagataatatgatttatgctctcctatgatagttctgcaacatgaattatagatc 4058074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 17947927 - 17947871
Alignment:
Q  323 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 379  Q
    ||||| |||||||||||||||||| ||||||  ||||  ||||||||||||||||||    
T  17947927 accataagattaaagaggtgcatagattttaaaatggtctgtccacaccatatattt 17947871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 322 - 527
Target Start/End: Complemental strand, 33464562 - 33464363
Alignment:
Q  322 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatc 420  Q
    ||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||| | ||||||||||||| |||||||||   ||||||||||||    
T  33464562 aaccattagattaaaaaggtgcacacattttatgatggtttctccacaccatatatttcacactctcttctccatggtggctcac---ttgtctcggatc 33464466  T
Q  421 taattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgttctttaaagttgctta 520  Q
     | |||||||||||||||   |||||| ||||||||| ||||||||||||| ||||||||||| ||| || |||||||||||||  ||||||||||||||    
T  33464465 cagttttctcactcttgt---gcgacctgatctcaaa-cccattaatttttgaaaacccattgcttccttatgttgtttaatgtcttttaaagttgctta 33464370  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 424 - 555
Target Start/End: Complemental strand, 48570369 - 48570251
Alignment:
Q  424 ttttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgttctttaaagttgcttaact 523  Q
    |||||||||| || |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||          |||||||||||    
T  48570369 ttttctcacttttattgtgcgaccagatctcaaaaccca---attttttaaaacccattgattcattctgttgtttaat----------gttgcttaact 48570283  T
Q  524 cactttgatcaacacgtttagagctaagacct 555  Q
    ||||||||| ||||||||||||||||||||||    
T  48570282 cactttgataaacacgtttagagctaagacct 48570251  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 56418101 - 56418160
Alignment:
Q  108 ttgaagaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttc 167  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  56418101 ttgaagaagaataatcaaataatttaagataatatgatttatgctctcctgtgatagttc 56418160  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 42601210 - 42601279
Alignment:
Q  7 gagagatgaaatgaagcttgtgggcatcaaagatatgagatgtggaatacagttttagcttctttaaagt 76  Q
    |||| ||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  42601210 gagatatgaaatgaagcttgtgggcagcaaagacatgagatgtgaaatacggttttagcttctttaaagt 42601279  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 48569406 - 48569453
Alignment:
Q  266 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 313  Q
    ||||||||| ||||||| |||||||||||||||  |||||||||||||    
T  48569406 ggtgaggtttaacatggaaaagggaagttgtttcccatgatgggaaag 48569453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 32894691 - 32894635
Alignment:
Q  323 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 379  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  32894691 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 32894635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 49347204 - 49347148
Alignment:
Q  323 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 379  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  49347204 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 49347148  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 322 - 527
Target Start/End: Original strand, 6006790 - 6006989
Alignment:
Q  322 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatc 420  Q
    ||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||| | ||||||||||||| |||||||||   ||||||||||||    
T  6006790 aaccattagattaaaaaggtgcacacattttatgatggtttctccagaccatatatttcacactctcttctccatggtggctcac---ttgtctcggatc 6006886  T
Q  421 taattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgttctttaaagttgctta 520  Q
     | |||||||||||||||   |||||| ||||||||| ||||||||||||| |||| |||||| ||| || ||||||||||||| |||||||||||||||    
T  6006887 cagttttctcactcttgt---gcgacctgatctcaaa-cccattaatttttgaaaatccattgcttccttatgttgtttaatgtcctttaaagttgctta 6006982  T

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Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 26245528 - 26245446
Alignment:
Q  90 tagttcattaatttataattgaagaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacat 175  Q
    ||||||||| |||||||||||||||   | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  26245528 tagttcatttatttataattgaaga---gcaatcaaataatttaagataatatgatttatgctctcctatgatagttttgcaacat 26245446  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 9145 - 9096
Alignment:
Q  264 aaggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 313  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  9145 aaggtgaggtttagtatgggaaagggaagtagtttttcatgatgggaaag 9096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 380
Target Start/End: Original strand, 49420084 - 49420198
Alignment:
Q  266 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtc 365  Q
    ||||||||| |  |||||||||| |||||||||  |||||||||||||         |||||||||||||| ||||||| ||||||||||||||  ||||    
T  49420084 ggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttatgatggtctgtc 49420183  T
Q  366 cacaccatatatttc 380  Q
    |||||||||||||||    
T  49420184 cacaccatatatttc 49420198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 445
Target Start/End: Complemental strand, 51051296 - 51051174
Alignment:
Q  323 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatct 421  Q
    |||||||||||||||||||||| ||||||||||||||  ||||  ||||||||||||| | |  ||||||||||  |||||||| | |||||||  |||     
T  51051296 accattagattaaagaggtgcacacattttatgatggtatgtctgcaccatatatttcacaccttcttctccattatggctcac-acttgtctcatatcc 51051198  T
Q  422 aattttctcactcttgttgtgcga 445  Q
      ||||||||||||||||||||||    
T  51051197 tgttttctcactcttgttgtgcga 51051174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 29647386 - 29647457
Alignment:
Q  326 attagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccata 396  Q
    ||||||||||||||||||| | |||||||||||| || ||||||||||||||||| | ||||||||||||||    
T  29647386 attagattaaagaggtgcacatattttatgatggtttctccacaccatatatttcacactctcttctccata 29647457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 445
Target Start/End: Original strand, 23593127 - 23593294
Alignment:
Q  278 catgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatat 377  Q
    |||||||| ||||||||||||  |||||||||||||         || |||| ||||||||||| || ||||||||||||||  ||||  ||||||||||    
T  23593127 catgggaatgggaagttgtttcccatgatgggaaagttttttttgactattacattaaagaggtacacacattttatgatggtatgtctgcaccatatat 23593226  T
Q  378 ttc-ctctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcga 445  Q
    ||| | |||||||||||   ||||||||| | |||||||  |||   ||||||||||||||||||||||    
T  23593227 ttcacactctcttctccgctgtggctcac-acttgtctcatatcctgttttctcactcttgttgtgcga 23593294  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 35840515 - 35840464
Alignment:
Q  329 agattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 380  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatatttc 35840464  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 42915041 - 42914997
Alignment:
Q  119 taatcaaataatttaagataatatgatttatgctctcctctgata 163  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  42915041 taatcaaataatttaagatgatatgatttatgctctcctatgata 42914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 35840429 - 35840390
Alignment:
Q  441 tgcgaccagatctcaaaacccattaattttttaaaaccca 480  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  35840429 tgcgaccagatctcaaaacccattaatttctcaaaaccca 35840390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 555
Target Start/End: Complemental strand, 48646101 - 48646073
Alignment:
Q  527 tttgatcaacacgtttagagctaagacct 555  Q
    |||||||||||||||||||||||||||||    
T  48646101 tttgatcaacacgtttagagctaagacct 48646073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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