View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13533_low_3 (Length: 414)
Name: NF13533_low_3
Description: NF13533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13533_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 27 - 414
Target Start/End: Complemental strand, 28783355 - 28782968
Alignment:
| Q |
27 |
caaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtcc |
126 |
Q |
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| T |
28783355 |
caaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtcc |
28783256 |
T |
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| Q |
127 |
accaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaacca |
226 |
Q |
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| T |
28783255 |
accaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaacca |
28783156 |
T |
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| Q |
227 |
tgtccaccaaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaaagccacccgttgttccaatatacaaaccac |
326 |
Q |
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| T |
28783155 |
tgtccaccaaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaaagccacccgttgttccaatatacaaaccac |
28783056 |
T |
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| Q |
327 |
cagttgttcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaagagctttttccatcaccc |
414 |
Q |
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| T |
28783055 |
cagttattcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaagagctttttccatcaccc |
28782968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 104 - 283
Target Start/End: Complemental strand, 28783383 - 28783201
Alignment:
| Q |
104 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
203 |
Q |
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| T |
28783383 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
28783284 |
T |
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| Q |
204 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
283 |
Q |
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| T |
28783283 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
28783201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 28782955 - 28782926
Alignment:
| Q |
385 |
attgcctccaaagagctttttccatcaccc |
414 |
Q |
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| T |
28782955 |
attgcctccaaagagctttttccatcaccc |
28782926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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