View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13533_low_4 (Length: 394)
Name: NF13533_low_4
Description: NF13533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13533_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 49739651 - 49740003
Alignment:
| Q |
17 |
taaactataagataaagcagaagaatatatattacagaacaagatgctcattaccaaagctagccatttatgatttatatatggtttaaacattaaatgc |
116 |
Q |
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| T |
49739651 |
taaactataagataaagcagaagaatatatattacagaacaagatgctcattaccaaagctagccatttatgatttatatatggtttaaacattaaatgc |
49739750 |
T |
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| Q |
117 |
accttggaacaacatgagctctttgaataagggnnnnnnntgtatatggaaagtatcacacaccatccactaattaaattaacacttggaagttgtaatc |
216 |
Q |
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| T |
49739751 |
accttggaacaacatgtgctctttgaataagggaaaaaaatgtatatggaaagtatcacacaccatccactaattaaattaacacttggaagttgtaatc |
49739850 |
T |
|
| Q |
217 |
attcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatggttctagactatctgagaag-nnnnnnncccctgttatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49739851 |
attcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatggttctagactatctgagaagttttttttcccctgttatt |
49739950 |
T |
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| Q |
316 |
tgtcactttaatagtgtacgctaatgttacttagatagcacatgaagtaaatt |
368 |
Q |
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|||||||||||||||||||| || ||| ||| |||| ||||||||||||||| |
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| T |
49739951 |
tgtcactttaatagtgtacggtacagttcctttgatatcacatgaagtaaatt |
49740003 |
T |
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