View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13533_low_9 (Length: 231)
Name: NF13533_low_9
Description: NF13533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13533_low_9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 8755997 - 8756220
Alignment:
| Q |
6 |
actaataagatctagtacttttaatttttgggatcattttagactattgttaattttaatgacaaaattgtccgacaagtgattcactacgaaaatacac |
105 |
Q |
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| T |
8755997 |
actaataagatctagtacttttaatttttgggatc--tttagactattgttaattttaatgacaaaattgtccgacaagtgattcactacgaaaatacac |
8756094 |
T |
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| Q |
106 |
tattggacacttgaaaggttcataatttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgaga |
205 |
Q |
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| T |
8756095 |
tattggacacttgaaaggttcgtaatttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgaga |
8756194 |
T |
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| Q |
206 |
catttaatgatggtaagttgtggttt |
231 |
Q |
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| T |
8756195 |
catttgatgatggtaagttgtggttt |
8756220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 8748523 - 8748659
Alignment:
| Q |
85 |
tgattcactacgaaaatacactattggacacttgaaaggttcataatttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgat |
184 |
Q |
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| T |
8748523 |
tgattcacttcgaaaatacaccattgaacactagaaaggttcataatttgatacctgaatttatcacttggcataagcatttccgaatccttgtcacaat |
8748622 |
T |
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| Q |
185 |
agtacaggccatcatttgagacatttaatgatggtaa |
221 |
Q |
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| T |
8748623 |
agtacatgccatcattcaagacatttgatgatggtaa |
8748659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 8766123 - 8766208
Alignment:
| Q |
116 |
ttgaaaggttcataa-tttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatt |
200 |
Q |
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| T |
8766123 |
ttgaatggttcataaatttgatacctgaatttatcagttggcataagctttgcagaatccttgtcagaaaagtacatgccatcatt |
8766208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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