View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13535_high_4 (Length: 359)
Name: NF13535_high_4
Description: NF13535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13535_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 30987524 - 30987866
Alignment:
| Q |
5 |
gcaatgaatatctccgactccggcaacgccgtatgtcacgctgtggcgatgccatttccaggaagaggacacatcaaccctatgctaagcttctgcaaaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30987524 |
gcaatgaatatctccgactccggcaacgccgtatgtcacgttgtggcgatgccatttccaggaagaggacacatcaaccctatgctaagcttctgcaaaa |
30987623 |
T |
|
| Q |
105 |
tcctaacctctcaaaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30987624 |
tcctaacctctcaaaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccg |
30987723 |
T |
|
| Q |
205 |
ctttgccaccattcccaacgttatcctgccggagcgggagaaagccggcgattttcctgctttctatgaagctgtcatgacaaagatggaagcaccgttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30987724 |
ctttgccaccattcccaacgttatcccgccggagcgggagaaagccggcgattttcctggtttctatgaagctgtcatgacaaagatggaagcaccgttt |
30987823 |
T |
|
| Q |
305 |
gagaagcttcttgatcagcttgagttgccggtggatgtgattg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30987824 |
gagaagcttcttgatcagcttgagttgccggtggatgtgattg |
30987866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 67 - 345
Target Start/End: Original strand, 30993598 - 30993864
Alignment:
| Q |
67 |
aagaggacacatcaaccctatgctaagcttctgcaaaatcctaacctctcaaaaacccaacaaccttctcatcactttcgtactcacagaagagtggctc |
166 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
30993598 |
aagaggacacatcaaccccatgctaagcttctgcaaaatcctaacatcccaaaaacccaacaaaattctcatcacc------------gaggagtggctc |
30993685 |
T |
|
| Q |
167 |
accttcatcggcgccgatccaaagccagaatccatccgctttgccaccattcccaacgttatcctgccggagcgggagaaagccggcgattttcctgctt |
266 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| | | ||||||||| | |
|
|
| T |
30993686 |
accattatcggcgccgatccaaagccagaatccatccgcttcaccaccattcctaacgtgatcccaccggagcgggagaaagcagccaattttcctggat |
30993785 |
T |
|
| Q |
267 |
tctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtggatgtgat |
345 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
30993786 |
tatatgaagctgtcatgacgaagatggaagctccttttgagtagcttcttgatcagcttgagtttccggtgaatgtgat |
30993864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 345
Target Start/End: Original strand, 30990262 - 30990564
Alignment:
| Q |
46 |
tgtggcgatgccatttccaggaagaggacacatcaaccctatgctaagcttctgcaaaatcctaacctctcaaaaacccaacaaccttctcatcactttc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||| | ||||||||||||| |||| || || || |
|
|
| T |
30990262 |
tgtggcgatgccatttccaggaagaggacacatcaaccccatgctaagcttaagcaaattcctaatctcacgaaaacccaacaacattcttattaccttt |
30990361 |
T |
|
| Q |
146 |
gtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccattcccaacgttatcctgccggagcgggaga |
245 |
Q |
| |
|
||| |||| ||||| |||||| ||| |||||| ||||||||||| ||||| |||||| |||||||||||| ||||| | | |||||||| |||| |
|
|
| T |
30990362 |
gtagtcactgaagaatggctcggctttatcggcagtgatccaaagccgaaatccgtccgctatgccaccattcctaacgtggttccaccggagcgtgaga |
30990461 |
T |
|
| Q |
246 |
aagccggcga---ttttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtggatgt |
342 |
Q |
| |
|
|| | || ||||||| || |||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
30990462 |
aaacaattgatagttttcctcagttttatgaagctgccataacaaagatggaagcgccgtttgagcagcttcttgatcagcttgagttgccggtgaatgt |
30990561 |
T |
|
| Q |
343 |
gat |
345 |
Q |
| |
|
||| |
|
|
| T |
30990562 |
gat |
30990564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 347
Target Start/End: Original strand, 30995439 - 30995741
Alignment:
| Q |
48 |
tggcgatgccatttccaggaagaggacacatcaaccctatgctaagcttctgcaaaatcctaacctctcaaaaacccaacaaccttctcatcactttcgt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||| | ||||||||||||| |||| |||||||| || |
|
|
| T |
30995439 |
tggcgatgccatttccaggaagaggacacatcaaccccatgctaagcttatgcaaattcctaatctcacgaaaacccaacaacattcttatcacttttgt |
30995538 |
T |
|
| Q |
148 |
actcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccattcccaacgttatcctgccggagcgggagaaa |
247 |
Q |
| |
|
| |||| ||||| ||||| ||| |||||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||||||| ||||||| |
|
|
| T |
30995539 |
agtcactgaagaatggcttggctttatcggcaatgatccaaagccggaatccatccgcttcgccaccatacccaacgtggctccaccggagcaggagaaa |
30995638 |
T |
|
| Q |
248 |
gc---cggcgattttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtggatgtga |
344 |
Q |
| |
|
| | |||||| | || |||||||||| |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30995639 |
actatagataattttcatctgttttatgaagctgccatgacgaagatggaagcgccgtttgaacagcttcttgatcaacttgagttgccggtgaatgtga |
30995738 |
T |
|
| Q |
345 |
ttg |
347 |
Q |
| |
|
||| |
|
|
| T |
30995739 |
ttg |
30995741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 345
Target Start/End: Original strand, 31001500 - 31001807
Alignment:
| Q |
41 |
cacgctgtggcgatgccatttccaggaagaggacacatcaaccctatgctaagcttctgcaaaatcctaacctctcaaaaacccaacaaccttctcatca |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||| | ||||||||||||| |||| |||| |
|
|
| T |
31001500 |
cacgttgtggcgatgccatttccaggaagaggacacatcaaccccatgctaagcttatgcaaattcctaatctcacgaaaacccaacaacattcttatca |
31001599 |
T |
|
| Q |
141 |
ctttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccattcccaacgttatcctgccggagcg |
240 |
Q |
| |
|
| || ||| |||| ||||| |||||||| || || ||||||||| || |||||| ||||||| || | |||||||||||||| | | |||||||| |
|
|
| T |
31001600 |
cctttgtagtcactgaagaatggctcacttttattaacgccgatccgaaaccagaagccatccgtttcacaaccattcccaacgtggttccaccggagcg |
31001699 |
T |
|
| Q |
241 |
ggagaaagccggcga---ttttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtg |
337 |
Q |
| |
|
|||||| | || ||||| | || |||||||||| |||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31001700 |
cgagaaaacattagatagttttcatcggttttatgaagctgccatgacgaagatggaagcgccttttgagaggcttcttgatcagcttgagttgccggtg |
31001799 |
T |
|
| Q |
338 |
gatgtgat |
345 |
Q |
| |
|
||||||| |
|
|
| T |
31001800 |
aatgtgat |
31001807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 32077073 - 32077027
Alignment:
| Q |
272 |
gaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttga |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
32077073 |
gaagatgtcatgacaaagatggaagcaccctttgaggagctacttga |
32077027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University