View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13535_low_12 (Length: 238)
Name: NF13535_low_12
Description: NF13535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13535_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 6893430 - 6893654
Alignment:
| Q |
13 |
catcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtac |
112 |
Q |
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| T |
6893430 |
catcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtac |
6893529 |
T |
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| Q |
113 |
attaatttcatttttatttcacttcaagaagttcataatgtatttannnnnnnnnnnnnnnnngtgactaaagttacatcaagtttttcttaaaatttta |
212 |
Q |
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| T |
6893530 |
attaatttcatttttatttcacttcaagaagttcataatgttttta-ttttttttatttttttgtgactaaagttacatcaagtttttcttaaaatttta |
6893628 |
T |
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| Q |
213 |
tgatttattttgcagatgaaattgac |
238 |
Q |
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| T |
6893629 |
tgatttgttttgcagatgaaattgac |
6893654 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 5940035 - 5939950
Alignment:
| Q |
31 |
ttagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtacatta |
116 |
Q |
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| T |
5940035 |
ttagagaagatacaaggtctcaaagatcaaatataaccatttctagtactgcttcttctcctggatacccttttaaaggtacatta |
5939950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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