View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13535_low_2 (Length: 561)
Name: NF13535_low_2
Description: NF13535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13535_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 7309334 - 7308793
Alignment:
| Q |
1 |
ctgtgttaccctgagttgggtaaaaagttaggtttggaaccattgacgggaattttgctgcacggaccacctggttgtgggaaaactagacttgctcatg |
100 |
Q |
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| T |
7309334 |
ctgtgttaccctgagttgggtaaaaagttaggtttggaaccattgacgggaattttgctgcacggaccacctggttgtgggaaaactagacttgctcatg |
7309235 |
T |
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| Q |
101 |
ctattgctaatgaaactgaacttcctttttatcctatttctgctactgatgttgtttctggtgtcactggtgagtatatgttattttgcttcaactttaa |
200 |
Q |
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| T |
7309234 |
ctattgctaatgaaactgaacttcctttttatcctatttctgctactgatgttgtttctggtgtcactggtgagtatatgttattttgcttcaactttaa |
7309135 |
T |
|
| Q |
201 |
ttccattatttttgtgttaaa-ttttattaatattaagcataaggctgctaggtt---aggaggagaatttggattcctttctgttgctaaaatccagca |
296 |
Q |
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| T |
7309134 |
ttccattatctgtgtgttaaatttttattaatattaagcataaggctgctaggttataaggaggagaatttggatttctttctgttgctaaaatccagca |
7309035 |
T |
|
| Q |
297 |
ttcacggactcatatgttggtgactgttggattaagatctaagaatgaagatttcaaacaaagtttttatttgatttccttaaacaccaacatctcgact |
396 |
Q |
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| T |
7309034 |
ttcacgaactcatatgttggtgactgttggattaagatctaagaatgaagatttcaagcaaagtttttatttgatttccttaaacactgacatctcgact |
7308935 |
T |
|
| Q |
397 |
cgacgttgaaatctaca-cgttcaatcttgatccgatagttaatgacatggttattgcgagatttttccgaataaggaaatctgaattcctttggacgat |
495 |
Q |
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| T |
7308934 |
cgacgttgaaatctacaccgttcaatcttgatccgatagttaatgacatggtgattgcgagatttttccgaataaggaaatctgaattcctttggactat |
7308835 |
T |
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| Q |
496 |
tagatgctcttttatattattattttcttttcgaattctcaa |
537 |
Q |
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| T |
7308834 |
tagatgctcttttatattattattttcttttcgaattctcaa |
7308793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 7299524 - 7299415
Alignment:
| Q |
49 |
ggaattttgctgcacggaccacctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactg |
148 |
Q |
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||||||||| | || || ||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||| |||| ||||||||| | |||||||||| |
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| T |
7299524 |
ggaattttgttacatgggccatctggttgtggaaaaactatgcttgcttatgctattgctaatgaagctgaagttcccttttatcctgtctctgctactg |
7299425 |
T |
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| Q |
149 |
atgttgtttc |
158 |
Q |
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| T |
7299424 |
atgttgtttc |
7299415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 786541 - 786654
Alignment:
| Q |
52 |
attttgctgcacggaccacctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactgatg |
151 |
Q |
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||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| || || | ||||||||| ||| |||||| ||||| || | |
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| T |
786541 |
attttgctgcatggaccacctggttgtggaaagactagacttgctcatgctattgctaacgagaccggtcttccttttcatcgtatttcggctaccgagg |
786640 |
T |
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| Q |
152 |
ttgtttctggtgtc |
165 |
Q |
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| T |
786641 |
tggtttctggtgtc |
786654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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