View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13535_low_3 (Length: 476)
Name: NF13535_low_3
Description: NF13535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13535_low_3 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 144 - 367
Target Start/End: Complemental strand, 37602284 - 37602064
Alignment:
| Q |
144 |
ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc |
243 |
Q |
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| T |
37602284 |
ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc |
37602187 |
T |
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| Q |
244 |
caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct |
343 |
Q |
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| T |
37602186 |
caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct |
37602088 |
T |
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| Q |
344 |
actcatttacatctatttcaataa |
367 |
Q |
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| T |
37602087 |
attcatttacatctatttgaataa |
37602064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 144 - 367
Target Start/End: Original strand, 46558707 - 46558927
Alignment:
| Q |
144 |
ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc |
243 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
46558707 |
ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc |
46558804 |
T |
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| Q |
244 |
caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct |
343 |
Q |
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| T |
46558805 |
caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct |
46558903 |
T |
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| Q |
344 |
actcatttacatctatttcaataa |
367 |
Q |
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| T |
46558904 |
attcatttacatctatttgaataa |
46558927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 22778728 - 22778625
Alignment:
| Q |
268 |
tgtaaagtagtggg-tttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcctactcatttacatctatttcaata |
366 |
Q |
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|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||| |||| |
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| T |
22778728 |
tgtaaagtagtggggtttgatg-cattattcacgtgtagaacttgcagccatattttgatgtaagtagttgatgcctattcatttacatctatttgaata |
22778630 |
T |
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| Q |
367 |
atgtg |
371 |
Q |
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||||| |
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| T |
22778629 |
atgtg |
22778625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 22778820 - 22778747
Alignment:
| Q |
144 |
ctgaaaaagattt-gatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagta |
216 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
22778820 |
ctgaaaaagattttgatcacttgatggcatgacgatagtcacatagccataggccatgcatttgatttgaagta |
22778747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 16829 - 16868
Alignment:
| Q |
30 |
gtgtaatgtccgtttcgaattatttaattgagtctagaag |
69 |
Q |
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| T |
16829 |
gtgtaacgcccgtttcgaattatttaattgagtctagaag |
16868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 27846676 - 27846704
Alignment:
| Q |
39 |
ccgtttcgaattatttaattgagtctaga |
67 |
Q |
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| T |
27846676 |
ccgtttcgaattatttaattgagtctaga |
27846704 |
T |
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