View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13535_low_8 (Length: 263)
Name: NF13535_low_8
Description: NF13535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13535_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 176061 - 176302
Alignment:
| Q |
1 |
ccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatcaaaataaccgattcctaaaat |
100 |
Q |
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| T |
176061 |
ccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatcaaaataaccgattcctaaaat |
176160 |
T |
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| Q |
101 |
cacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176161 |
cacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct |
176260 |
T |
|
| Q |
201 |
acctctgcataacttcagcttgggggtttctagggattgcct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
176261 |
acctctgcataacttcagcttgggggtttctagggattgcct |
176302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 1459734 - 1459628
Alignment:
| Q |
138 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
231 |
Q |
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||||||||||||| |||||||||| ||||| |||| ||||||| ||||| |||||||| || |||||||||||||| ||||||||||||| | |
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| T |
1459734 |
cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat |
1459635 |
T |
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| Q |
232 |
agggatt |
238 |
Q |
| |
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||||||| |
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| T |
1459634 |
agggatt |
1459628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 1471116 - 1471010
Alignment:
| Q |
138 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
231 |
Q |
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||||||||||||| |||||||||| ||||| |||| ||||||| ||||| ||||||| | || ||||||| |||||| ||||||||||||||| |
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| T |
1471116 |
cattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttct |
1471017 |
T |
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| Q |
232 |
agggatt |
238 |
Q |
| |
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||||||| |
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| T |
1471016 |
agggatt |
1471010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 3926917 - 3926979
Alignment:
| Q |
138 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct |
200 |
Q |
| |
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||||||||||||| |||||||||| ||||| |||| |||||||| | |||||||| |||||| |
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| T |
3926917 |
cattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtct |
3926979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 3926826 - 3926898
Alignment:
| Q |
11 |
tcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatcaaaa |
83 |
Q |
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|||||||| ||||| | ||| ||||||| |||||||||||||||| || |||||||||| ||| ||||||| |
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| T |
3926826 |
tcatgggtttacccaatgggtatgttgggaaatttgtaagtggcacaattaattgggccatagaaaatcaaaa |
3926898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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