View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13536_high_2 (Length: 368)
Name: NF13536_high_2
Description: NF13536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13536_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 56164677 - 56165012
Alignment:
| Q |
18 |
atatcaacagatttattaatgcagcaatacaaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttag |
117 |
Q |
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| T |
56164677 |
atatcaacagatttattaatgcagcaatacaaagaggaattgaaaacctagacattgacatgttggaggatgttaatggattaaccagtagcatttttag |
56164776 |
T |
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| Q |
118 |
ttgcaagacactcactgttctcaaactg---aaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagat |
214 |
Q |
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| T |
56164777 |
ttgcaagacactcactgttctcaaattgttgaaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagat |
56164876 |
T |
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| Q |
215 |
attatgaggttcagttatcaagcaactattaccaagtttttcttaggttgtcccgttatagaggaattgcgaacaaagattgctgcgttttatttgagga |
314 |
Q |
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| T |
56164877 |
attatgaggttcagttatcaagcaactattaccaagtttttcttaggttgtcccgttatagaggaattgcgaacaaagattgctgcgttttatttgagga |
56164976 |
T |
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| Q |
315 |
agcttaatccagaaacacccaacttgatgagaacaa |
350 |
Q |
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| T |
56164977 |
agcttaatccagaaacacccaacttgatgagaacaa |
56165012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 44253419 - 44253562
Alignment:
| Q |
47 |
caaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttagttgcaagacactcactgttctcaaactga |
146 |
Q |
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| T |
44253419 |
caaagaggaatcgaagaactagacattgacatgttggagaatgttaatggattaacagatagcattttcagttgcaagacactcactgtcctcaaattga |
44253518 |
T |
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| Q |
147 |
aaaacctgtttgtgaaagatgacaattaccaagtagatcttcct |
190 |
Q |
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| T |
44253519 |
aaaacctatcgatgagagacgacaattgtcaaatagatcttcct |
44253562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 44258860 - 44258900
Alignment:
| Q |
23 |
aacagatttattaatgcagcaatacaaagaggaattgaaaa |
63 |
Q |
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| T |
44258860 |
aacagattcattaatgcagcaatacaaagaggaatggaaaa |
44258900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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